Ephrin-B3 controls excitatory synapse density through cell-cell competition for EphBs
Open accessAbstract
Cortical networks are characterized by sparse connectivity, with synapses found at only a subset of axo-dendritic contacts. Yet within these networks, neurons can exhibit high connection probabilities, suggesting that cell-intrinsic factors, not proximity, determine connectivity. Here, we identify ephrin-B3 (eB3) as a factor that determines synapse density by mediating a cell-cell competition that requires ephrin-B-EphB signaling. In a microisland culture system designed to isolate cell-cell competition, we find that eB3 determines winning and losing neurons in a contest for synapses. In a Mosaic Analysis with Double Markers (MADM) genetic mouse model system in vivo the relative levels of eB3 control spine density in layer 5 and 6 neurons. MADM cortical neurons in vitro reveal that eB3 controls synapse density independently of action potential-driven activity. Our findings illustrate a new class of competitive mechanism mediated by trans-synaptic organizing proteins which control the number of synapses neurons receive relative to neighboring neurons.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Ephrin stimulates excitatory synapses development and is closely related to neurogenesis, plasticity and learning.
“Also, it has been shown that ephrin stimulates excitatory synapses development [127–129] and is closely related to neurogenesis, plasticity and learning [93].”
From Molecular Characterisation of the Mechanism of Action of Stimulant Drugs Lisdexamfetamine and Methylphenidate on ADHD Neurobiology: A Review (2022) · cites this paper as [128]
The source is cited for the first clause, not the neurogenesis, plasticity, and learning clause, which has a separate citation. Its Introduction and Discussion support a role for ephrin-B3 in regulating excitatory synapse density during development, but the Introduction explicitly says it is not required for synapse formation; it controls the local distribution of synapses instead. Thus, saying broadly that ephrin stimulates synapse development overstates the finding. (LLM, conf=0.83)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Homeostatic Synaptic Plasticity: Local and Global Mechanisms for Stabilizing Neuronal Function
Turrigiano, G. (2012) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a005736 · Cited by 1,139 · cited 1× · see citing works
“Our findings suggest that while neurons possess activity-dependent mechanisms that regulate the input-output relationship of neurons (Turrigiano, 2012), molecular cues can also set the density of excitatory inputs.”
BackgroundZoghbi, H. Y., & Bear, M. F. (2012) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a009886 · Cited by 797 · see citing works
Satb2 Regulates Callosal Projection Neuron Identity in the Developing Cerebral Cortex
Alcamo, E. A., Chirivella, L., Dautzenberg, M., Dobreva, G., Fariñas, I., Grosschedl, R., & McConnell, S. K. (2008) · Neuron · doi:10.1016/j.neuron.2007.12.012 · Cited by 658 · see citing works
Neurogeometry and potential synaptic connectivity
STEPANYANTS, A., & CHKLOVSKII, D. (2005) · Trends in Neurosciences · doi:10.1016/j.tins.2005.05.006 · Cited by 254 · see citing works
Flagged first, then by citations
Research works printed but not linked: 48
- Allen TG 2006 Preparation and maintenance of single-cell micro-island cultures of basal forebrain neurons Nature Protocols 1 2543 2550 10.1038/nprot.2006.394 17406501 · DOI
- Anderson CM Zhang B Miller M Butko E Wu X Laver T Kernag C Kim J Luo Y Lamparski H Park E Su N Ma XJ 2016 Fully automated RNAscope in situ hybridization assays for Formalin-Fixed Paraffin-Embedded cells and tissues Journal of Cellular Biochemistry 117 2201 2208 10.1002/jcb.25606 27191821 PMC5132049 · DOI
- Antion MD Christie LA Bond AM Dalva MB Contractor A 2010 Ephrin-B3 regulates glutamate receptor signaling at hippocampal synapses Molecular and Cellular Neuroscience 45 378 388 10.1016/j.mcn.2010.07.011 20678574 PMC2962683 · DOI
- Ataman B Boulting GL Harmin DA Yang MG Baker-Salisbury M Yap EL Malik AN Mei K Rubin AA Spiegel I Durresi E Sharma N Hu LS Pletikos M Griffith EC Partlow JN Stevens CR Adli M Chahrour M Sestan N Walsh CA Berezovskii VK Livingstone MS Greenberg ME 2016 Evolution of osteocrin as an activity-regulated factor in the primate brain Nature 539 242 247 10.1038/nature20111 27830782 PMC5499253 · DOI · Paper page
- Augustin I Rosenmund C Südhof TC Brose N 1999 Munc13-1 is essential for fusion competence of glutamatergic synaptic vesicles Nature 400 457 461 10.1038/22768 10440375 · DOI · Paper page
- Beattie R Postiglione MP Burnett LE Laukoter S Streicher C Pauler FM Xiao G Klezovitch O Vasioukhin V Ghashghaei TH Hippenmeyer S 2017 Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells Neuron 94 517 533 10.1016/j.neuron.2017.04.012 28472654 · DOI
- Bian WJ Miao WY He SJ Qiu Z Yu X 2015 Coordinated spine pruning and maturation mediated by Inter-Spine competition for cadherin/Catenin complexes Cell 162 808 822 10.1016/j.cell.2015.07.018 26255771 · DOI
- Biederer T Stagi M 2008 Signaling by synaptogenic molecules Current Opinion in Neurobiology 18 261 269 10.1016/j.conb.2008.07.014 18725297 PMC2633430 · DOI
- Bouvier D Corera AT Tremblay ME Riad M Chagnon M Murai KK Pasquale EB Fon EA Doucet G 2008 Pre-synaptic and post-synaptic localization of EphA4 and EphB2 in adult mouse forebrain Journal of Neurochemistry 106 682 695 10.1111/j.1471-4159.2008.05416.x 18410519 · DOI
- Brown SP Hestrin S 2009 Intracortical circuits of pyramidal neurons reflect their long-range axonal targets Nature 457 1133 1136 10.1038/nature07658 19151698 PMC2727746 · DOI
- Brunel N 2016 Is cortical connectivity optimized for storing information? Nature Neuroscience 19 749 755 10.1038/nn.4286 27065365 · DOI
- Chen B Wang SS Hattox AM Rayburn H Nelson SB McConnell SK 2008 The Fezf2-Ctip2 genetic pathway regulates the fate choice of subcortical projection neurons in the developing cerebral cortex PNAS 105 11382 11387 10.1073/pnas.0804918105 18678899 PMC2495013 · DOI
- Chklovskii DB Mel BW Svoboda K 2004 Cortical rewiring and information storage Nature 431 782 788 10.1038/nature03012 15483599 · DOI · Paper page
- Dalva MB McClelland AC Kayser MS 2007 Cell adhesion molecules: signalling functions at the synapse Nature Reviews Neuroscience 8 206 220 10.1038/nrn2075 17299456 PMC4756920 · DOI · Paper page
- Druckmann S Feng L Lee B Yook C Zhao T Magee JC Kim J 2014 Structured synaptic connectivity between hippocampal regions Neuron 81 629 640 10.1016/j.neuron.2013.11.026 24412418 · DOI
- English CN Vigers AJ Jones KR 2012 Genetic evidence that brain-derived neurotrophic factor mediates competitive interactions between individual cortical neurons PNAS 109 19456 19461 10.1073/pnas.1206492109 23129644 PMC3511098 · DOI
- Espinosa JS Wheeler DG Tsien RW Luo L 2009 Uncoupling dendrite growth and patterning: single-cell knockout analysis of NMDA receptor 2B Neuron 62 205 217 10.1016/j.neuron.2009.03.006 19409266 PMC2788338 · DOI
- Flavell SW Cowan CW Kim TK Greer PL Lin Y Paradis S Griffith EC Hu LS Chen C Greenberg ME 2006 Activity-dependent regulation of MEF2 transcription factors suppresses excitatory synapse number Science 311 1008 1012 10.1126/science.1122511 16484497 · DOI · Paper page
- Gorski JA Talley T Qiu M Puelles L Rubenstein JL Jones KR 2002 Cortical excitatory neurons and glia, but not GABAergic neurons, are produced in the Emx1-expressing lineage The Journal of Neuroscience 22 6309 6314 10.1523/JNEUROSCI.22-15-06309.2002 12151506 PMC6758181 · DOI
- Harb K Magrinelli E Nicolas CS Lukianets N Frangeul L Pietri M Sun T Sandoz G Grammont F Jabaudon D Studer M Alfano C 2016 Area-specific development of distinct projection neuron subclasses is regulated by postnatal epigenetic modifications eLife 5 e09531 10.7554/eLife.09531 26814051 PMC4744182 · DOI
- Harms KJ Craig AM 2005 Synapse composition and organization following chronic activity blockade in cultured hippocampal neurons The Journal of Comparative Neurology 490 72 84 10.1002/cne.20635 16041714 · DOI · Paper page
- Hippenmeyer S Youn YH Moon HM Miyamichi K Zong H Wynshaw-Boris A Luo L 2010 Genetic mosaic dissection of Lis1 and Ndel1 in neuronal migration Neuron 68 695 709 10.1016/j.neuron.2010.09.027 21092859 PMC3044607 · DOI
- Hruska M Henderson NT Xia NL Le Marchand SJ Dalva MB 2015 Anchoring and synaptic stability of PSD-95 is driven by ephrin-B3 Nature Neuroscience 18 1594 1605 10.1038/nn.4140 26479588 PMC5396457 · DOI
- Joo W Hippenmeyer S Luo L 2014 Dendrite morphogenesis depends on relative levels of NT-3/TrkC signaling Science 346 626 629 10.1126/science.1258996 25359972 PMC4631524 · DOI
- Kalisman N Silberberg G Markram H 2005 The neocortical microcircuit as a tabula rasa PNAS 102 880 885 10.1073/pnas.0407088102 15630093 PMC545526 · DOI
- Kasthuri N Hayworth KJ Berger DR Schalek RL Conchello JA Knowles-Barley S Lee D Vázquez-Reina A Kaynig V Jones TR Roberts M Morgan JL Tapia JC Seung HS Roncal WG Vogelstein JT Burns R Sussman DL Priebe CE Pfister H Lichtman JW 2015 Saturated reconstruction of a volume of neocortex Cell 162 648 661 10.1016/j.cell.2015.06.054 26232230 · DOI · Paper page
- Katz LC Shatz CJ 1996 Synaptic activity and the construction of cortical circuits Science 274 1133 1138 10.1126/science.274.5290.1133 8895456 · DOI · Paper page
- Kwon HB Kozorovitskiy Y Oh WJ Peixoto RT Akhtar N Saulnier JL Gu C Sabatini BL 2012 Neuroligin-1-dependent competition regulates cortical synaptogenesis and synapse number Nature Neuroscience 15 1667 1674 10.1038/nn.3256 23143522 PMC3536444 · DOI
- Lai KO Ip NY 2009 Synapse development and plasticity: roles of ephrin/Eph receptor signaling Current Opinion in Neurobiology 19 275 283 10.1016/j.conb.2009.04.009 19497733 · DOI
- Leone DP Heavner WE Ferenczi EA Dobreva G Huguenard JR Grosschedl R McConnell SK 2015 Satb2 regulates the differentiation of both callosal and subcerebral projection neurons in the developing cerebral cortex Cerebral Cortex 25 3406 3419 10.1093/cercor/bhu156 25037921 PMC4585495 · DOI
- McClelland AC Sheffler-Collins SI Kayser MS Dalva MB 2009 Ephrin-B1 and ephrin-B2 mediate EphB-dependent presynaptic development via syntenin-1 PNAS 106 20487 20492 10.1073/pnas.0811862106 19915143 PMC2787153 · DOI
- McClelland AC Hruska M Coenen AJ Henkemeyer M Dalva MB 2010 Trans-synaptic EphB2-ephrin-B3 interaction regulates excitatory synapse density by inhibition of postsynaptic MAPK signaling PNAS 107 8830 8835 10.1073/pnas.0910644107 20410461 PMC2889310 · DOI
- McMahon SA Díaz E 2011 Mechanisms of excitatory synapse maturation by trans-synaptic organizing complexes Current Opinion in Neurobiology 21 221 227 10.1016/j.conb.2010.12.005 21242087 PMC3085653 · DOI
- Oswald MJ Tantirigama ML Sonntag I Hughes SM Empson RM 2013 Diversity of layer 5 projection neurons in the mouse motor cortex Frontiers in Cellular Neuroscience 7 174 10.3389/fncel.2013.00174 24137110 PMC3797544 · DOI
- San Miguel S Serrano MJ Sachar A Henkemeyer M Svoboda KK Benson MD 2011 Ephrin reverse signaling controls palate fusion via a PI3 kinase-dependent mechanism Developmental Dynamics 240 357 364 10.1002/dvdy.22546 21246652 PMC3071159 · DOI
- Sando R Bushong E Zhu Y Huang M Considine C Phan S Ju S Uytiepo M Ellisman M Maximov A 2017 Assembly of excitatory synapses in the absence of glutamatergic neurotransmission Neuron 94 312 321 10.1016/j.neuron.2017.03.047 28426966 PMC5521186 · DOI
- Sanes JR Yamagata M 2009 Many paths to synaptic specificity Annual Review of Cell and Developmental Biology 25 161 195 10.1146/annurev.cellbio.24.110707.175402 19575668 · DOI
- Scheiffele P Fan J Choih J Fetter R Serafini T 2000 Neuroligin expressed in nonneuronal cells triggers presynaptic development in contacting axons Cell 101 657 669 10.1016/S0092-8674(00)80877-6 10892652 · DOI · Paper page
- Sigler A Oh WC Imig C Altas B Kawabe H Cooper BH Kwon H-B Rhee J-S Brose N 2017 Formation and maintenance of functional spines in the absence of presynaptic glutamate release Neuron 94 304 311 10.1016/j.neuron.2017.03.029 28426965 PMC5418202 · DOI
- Singh SK Stogsdill JA Pulimood NS Dingsdale H Kim YH Pilaz LJ Kim IH Manhaes AC Rodrigues WS Pamukcu A Enustun E Ertuz Z Scheiffele P Soderling SH Silver DL Ji RR Medina AE Eroglu C 2016 Astrocytes assemble thalamocortical synapses by bridging NRX1α and NL1 via hevin Cell 164 183 196 10.1016/j.cell.2015.11.034 26771491 PMC4715262 · DOI
- Song S Sjöström PJ Reigl M Nelson S Chklovskii DB 2005 Highly nonrandom features of synaptic connectivity in local cortical circuits PLOS Biology 3 e68 10.1371/journal.pbio.0030068 15737062 PMC1054880 · DOI · Paper page
- Takemoto M Fukuda T Sonoda R Murakami F Tanaka H Yamamoto N 2002 Ephrin-B3-EphA4 interactions regulate the growth of specific thalamocortical axon populations in vitro European Journal of Neuroscience 16 1168 1172 10.1046/j.1460-9568.2002.02166.x 12383247 · DOI
- Tarsa L Goda Y 2002 Synaptophysin regulates activity-dependent synapse formation in cultured hippocampal neurons PNAS 99 1012 1016 10.1073/pnas.022575999 11792847 PMC117422 · DOI
- Varoqueaux F Aramuni G Rawson RL Mohrmann R Missler M Gottmann K Zhang W Südhof TC Brose N 2006 Neuroligins determine synapse maturation and function Neuron 51 741 754 10.1016/j.neuron.2006.09.003 16982420 · DOI
- Williams ME de Wit J Ghosh A 2010 Molecular mechanisms of synaptic specificity in developing neural circuits Neuron 68 9 18 10.1016/j.neuron.2010.09.007 20920787 PMC3327884 · DOI
- Yin DM Chen YJ Sathyamurthy A Xiong WC Mei L 2012 Synaptic dysfunction in schizophrenia Advances in Experimental Medicine and Biology 970 493 516 10.1007/978-3-7091-0932-8_22 22351070 · DOI
- Yokoyama N Romero MI Cowan CA Galvan P Helmbacher F Charnay P Parada LF Henkemeyer M 2001 Forward signaling mediated by ephrin-B3 prevents contralateral corticospinal axons from recrossing the spinal cord midline Neuron 29 85 97 10.1016/S0896-6273(01)00182-9 11182083 · DOI
- Zong H Espinosa JS Su HH Muzumdar MD Luo L 2005 Mosaic analysis with double markers in mice Cell 121 479 492 10.1016/j.cell.2005.02.012 15882628 · DOI
Cited by
Sorted by citations
Quintero, J., Gutiérrez-Casares, J. R., & Álamo, C. (2022) · Neurology and Therapy · doi:10.1007/s40120-022-00392-2 · Cited by 70 · see citing works
- Authors
- Henderson, N. T., Le Marchand, S. J., Hruska, M., Hippenmeyer, S., Luo, L., & Dalva, M. B.
- Affiliations
- Thomas Jefferson University (US)
- Bio-Imaging Center, University of Delaware, Newark, United States
- Institute of Science and Technology Austria (AT)
- Howard Hughes Medical Institute (US)
- Corresponding author
- Dalva, Matthew B
- ORCID
- Venue
- eLife
- Publisher
- eLife Sciences Publications, Ltd
- Published
- 2019-02-21
- Volume
- 8
- ISSN
- 2050-084X (ISSN-L)
- PMC
- PMC6384025
- OpenAlex
- W2917093014
- Cited by
- 15
- References
- 4
- Citations by year
- 2025: 5 · 2024: 1 · 2022: 3 · 2021: 2 · 2020: 3 · 2019: 1
- FWCI
- 1.07
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- eLife (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- The Medicine Forum (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Howard Hughes Medical Institute
- National Institute of Neurological Disorders and Stroke (RO1NS050835, R01NS106906)
- National Institute on Drug Abuse (R01DA022727)
- Farber Family Fund
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Axon Guidance and Neuronal Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Keywords
- ephrin-B3, EphB receptors, synaptic density, excitatory synapses, cortical connectivity, dendritic spine density
- MeSH terms
- Animals, Cell Communication, Cerebral Cortex, Nerve Net, Neurons, Ephrin-B3, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review