Otto, Thomas D

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

Quail, M., Smith, M. E., Coupland, P., Otto, T. D., Harris, S. R., Connor, T. R., Bertoni, A., Swerdlow, H. P., & Gu, Y. (2012) · BMC Genomics

Genomics and Phylogenetic StudiesGenomics and Rare Diseases

Cited by 2,031

Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis

Alivernini, S., MacDonald, L., Elmesmari, A., Finlay, S., Tolusso, B., Gigante, M. R., Petricca, L., Di Mario, C., Bui, L., Perniola, S., et al. (2020) · Nature Medicine

Rheumatoid Arthritis Research and TherapiesImmune cells in cancer

Cited by 740

Optimal enzymes for amplifying sequencing libraries

Quail, M. A., Otto, T. D., Gu, Y., Harris, S. R., Skelly, T. F., McQuillan, J. A., Swerdlow, H. P., & Oyola, S. O. (2012) · Nature Methods

Genomics and Phylogenetic StudiesMolecular Biology Techniques and Applications

Cited by 196

Integrated pathogen load and dual transcriptome analysis of systemic host-pathogen interactions in severe malaria

Lee, H. J., Georgiadou, A., Walther, M., Nwakanma, D., Stewart, L. B., Levin, M., Otto, T. D., Conway, D. J., Coin, L. J., & Cunnington, A. J. (2018) · Science Translational Medicine

Malaria Research and ControlHemoglobinopathies and Related Disorders

Cited by 141

Evolutionary analysis of the most polymorphic gene family in falciparum malaria

Otto, T. D., Assefa, S. A., Böhme, U., Sanders, M. J., Kwiatkowski, D. P., Pf3k consortium, Berriman, M., & Newbold, C. (2019) · Wellcome Open Research

Malaria Research and ControlGenetic diversity and population structure

Cited by 90

paraCell: a novel software tool for the interactive analysis and visualization of standard and dual host–parasite single-cell RNA-seq data

Agboraw, E., Haese-Hill, W., Hentzschel, F., Briggs, E., Aghabi, D., Heawood, A., Harding, C. R., Shiels, B., Crouch, K., Somma, D., et al. (2025) · Nucleic Acids Research

Single-cell and spatial transcriptomicsToxoplasma gondii Research Studies

Cited by 4