Wassenaar, Tsjerk A.

Martini 3: A general purpose force field for coarse-grained molecular dynamics

Souza, P. C. T., Alessandri, R., Barnoud, J., Thallmair, S., Faustino, I., Grünewald, F., Patmanidis, I., Abdizadeh, H., Bruininks, B. M. H., Wassenaar, T. A., et al. (2021) · Nature Methods

Advanced Physical and Chemical Molecular InteractionsProtein Structure and Dynamics

Cited by 1,551

‘Improved parameters for the Martini coarse-grained protein force field’

de Jong, D. H., Singh, G., Bennett, W. F. D., Arnarez, C., Wassenaar, T. A., Schäfer, L. V., Periole, X., Tieleman, D. P., & Marrink, S. J. (2013) · Journal of Chemical Theory and Computation

Protein Structure and DynamicsAdvanced Physical and Chemical Molecular Interactions

Cited by 1,486

Computational Lipidomics with insane : A Versatile Tool for Generating Custom Membranes for Molecular Simulations

Wassenaar, T. A., Ingólfsson, H. I., Böckmann, R. A., Tieleman, D. P., & Marrink, S. J. (2015) · Journal of Chemical Theory and Computation

Lipid Membrane Structure and BehaviorProtein Structure and Dynamics

Cited by 1,174

Martinize2 and Vermouth provide a unified framework for molecular topology generation

Kroon, P. C., Grünewald, F., Barnoud, J., van Tilburg, M., Brasnett, C., Souza, P. C., Wassenaar, T. A., & Marrink, S. J. (2025) · eLife

Protein Structure and DynamicsAdvanced Physical and Chemical Molecular Interactions

Cited by 124

Martinize2 and Vermouth: Unified Framework for Topology Generation

Kroon, P. C., Grünewald, F., Barnoud, J., van Tilburg, M., Brasnett, C., Souza, P. C. T., Wassenaar, T. A., & Marrink, S.-J. (2022) · arXiv

Protein Structure and DynamicsAdvanced Physical and Chemical Molecular Interactions

Cited by 124

Molecular architecture and dynamics of SARS-CoV-2 envelope by integrative modeling

Pezeshkian, W., Grünewald, F., Narykov, O., Lu, S., Arkhipova, V., Solodovnikov, A., Wassenaar, T. A., Marrink, S. J., & Korkin, D. (2023) · Structure

Protein Structure and DynamicsSARS-CoV-2 and COVID-19 Research

Cited by 60

Molecular architecture and dynamics of SARS-CoV-2 envelope by integrative modeling

Pezeshkian, W., Grünewald, F., Narykov, O., Lu, S., Arkhipova, V., Solodovnikov, A., Wassenaar, T. A., Marrink, S. J., & Korkin, D. (2021) · Structure

Protein Structure and DynamicsSARS-CoV-2 and COVID-19 Research

Cited by 60

An integrative modelling approach to the mitochondrial cristae

Brown, C. M., Westendorp, M. S. S., Zarmiento-Garcia, R., Stevens, J. A., Rouse, S. L., Marrink, S. J., & Wassenaar, T. A. (2024) · Communications Biology

Mitochondrial Function and PathologyProtein Structure and Dynamics

Cited by 21