Sledzieski, Samuel

Democratizing Protein Language Models with Parameter-Efficient Fine-Tuning

Sledzieski, S., Kshirsagar, M., Baek, M., Berger, B., Dodhia, R., & Ferres, J. L. (2023) · Proceedings of the National Academy of Sciences

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 86

Democratizing protein language models with parameter-efficient fine-tuning

Sledzieski, S., Kshirsagar, M., Baek, M., Dodhia, R., Lavista Ferres, J., & Berger, B. (2024) · Proceedings of the National Academy of Sciences

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 86

Learning the language of protein-protein interactions

Ullanat, V., Jing, B., Sledzieski, S., & Berger, B. (2025) · Nature Communications

Machine Learning in BioinformaticsBioinformatics and Genomic Networks

Cited by 26

Rapid and accurate prediction of protein homo-oligomer symmetry using Seq2Symm

Kshirsagar, M., Meller, A., Humphreys, I. R., Sledzieski, S., Xu, Y., Dodhia, R., Horvitz, E., Berger, B., Bowman, G. R., Ferres, J. L., et al. (2025) · Nature Communications

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 23

Rapid and accurate prediction of protein homo-oligomer symmetry with Seq2Symm

Kshirsagar, M., Meller, A., Humphreys, I., Sledzieski, S., Xu, Y., Dodhia, R., Horvitz, E., Berger, B., Bowman, G., Ferres, J. L., et al. (2024) · Nature Communications

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 22

Transfer of knowledge from model organisms to evolutionarily distant non-model organisms: The coral Pocillopora damicornis membrane signaling receptome

Kumar, L., Brenner, N., Sledzieski, S., Olaosebikan, M., Roger, L. M., Lynn-Goin, M., Klein-Seetharaman, R., Berger, B., Putnam, H., Yang, J., et al. (2023) · PLOS ONE

Genomics and Phylogenetic StudiesCoral and Marine Ecosystems Studies

Cited by 11

Single-cell mosaicism analysis reveals cell-type-specific somatic mutational burden in Alzheimer’s Dementia

Kousi, M., Boix, C., Park, Y. P., Mathys, H., Sledzieski, S., Peng, Z., Bennett, D. A., Tsai, L.-H., & Kellis, M. (2022) · bioRxiv (Cold Spring Harbor Laboratory)

Alzheimer's disease research and treatmentsSingle-cell and spatial transcriptomics

Cited by 7