Callahan, Benjamin J.

DADA2: High–resolution sample inference from Illumina amplicon data

Callahan, B. J., McMurdie, P. J., Rosen, M. J., Han, A. W., Johnson, A. J. A., & Holmes, S. P. (2016) · Nature Methods

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 35,698

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., et al. (2019) · Nature Biotechnology

Scientific Computing and Data ManagementGut microbiota and health

Cited by 23,742

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Davis, N. M., Proctor, D. M., Holmes, S. P., Relman, D. A., & Callahan, B. J. (2018) · Microbiome

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 3,493

Temporal and spatial variation of the human microbiota during pregnancy

DiGiulio, D. B., Callahan, B. J., McMurdie, P. J., Costello, E. K., Lyell, D. J., Robaczewska, A., Sun, C. L., Goltsman, D. S. A., Wong, R. J., Shaw, G., et al. (2015) · Proceedings of the National Academy of Sciences

Reproductive tract infections researchGut microbiota and health

Cited by 1,129

Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women

Callahan, B. J., DiGiulio, D. B., Goltsman, D. S. A., Sun, C. L., Costello, E. K., Jeganathan, P., Biggio, J. R., Wong, R. J., Druzin, M. L., Shaw, G. M., et al. (2017) · Proceedings of the National Academy of Sciences

Reproductive tract infections researchPreterm Birth and Chorioamnionitis

Cited by 391

REPRODUCIBLE RESEARCH WORKFLOW IN R FOR THE ANALYSIS OF PERSONALIZED HUMAN MICROBIOME DATA

CALLAHAN, B., PROCTOR, D., RELMAN, D., FUKUYAMA, J., & HOLMES, S. (2016) · Biocomputing 2016

Scientific Computing and Data ManagementGenomics and Phylogenetic Studies

Cited by 35