Ivankov, Dmitry N.

Local fitness landscape of the green fluorescent protein

Sarkisyan, K. S., Bolotin, D. A., Meer, M. V., Usmanova, D. R., Mishin, A. S., Sharonov, G. V., Ivankov, D. N., Bozhanova, N. G., Baranov, M. S., Soylemez, O., et al. (2016) · Nature

Evolution and Genetic DynamicsRNA and protein synthesis mechanisms

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Using AlphaFold to predict the impact of single mutations on protein stability and function

Pak, M. A., Markhieva, K. A., Novikova, M. S., Petrov, D. S., Vorobyev, I. S., Maksimova, E. S., Kondrashov, F. A., & Ivankov, D. N. (2021) · PLoS ONE

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 322

Using AlphaFold to predict the impact of single mutations on protein stability and function

Pak, M. A., Markhieva, K. A., Novikova, M. S., Petrov, D. S., Vorobyev, I. S., Maksimova, E. S., Kondrashov, F. A., & Ivankov, D. N. (2023) · PLOS One

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 322

Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation

Usmanova, D. R., Bogatyreva, N. S., Ariño Bernad, J., Eremina, A. A., Gorshkova, A. A., Kanevskiy, G. M., Lonishin, L. R., Meister, A. V., Yakupova, A. G., Kondrashov, F. A., et al. (2018) · Bioinformatics

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 93

Best templates outperform homology models in predicting the impact of mutations on protein stability

Pak, M. A., & Ivankov, D. N. (2022) · Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 26

MULAN: multimodal protein language model for sequence and structure encoding

Frolova, D., Pak, M., Litvin, A., Sharov, I., Ivankov, D., & Oseledets, I. (2024) · Bioinformatics Advances

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 12

MULAN: Multimodal Protein Language Model for Sequence and Structure Encoding

Frolova, D., Pak, M. A., Litvin, A., Sharov, I., Ivankov, D. N., & Oseledets, I. (2024) · Bioinformatics Advances

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 12

Design of stable circular permutants of the GroEL chaperone apical domain

Melnik, T. N., Majorina, M. A., Vorobeva, D. E., Nagibina, G. S., Veselova, V. R., Glukhova, K. А., Pak, M. A., Ivankov, D. N., Uversky, V. N., & Melnik, B. S. (2023) · Cell Communication and Signaling

Protein Structure and DynamicsHeat shock proteins research

Cited by 1

Design of stable circular permutants of the GroEL chaperone apical domain

Melnik, T. N., Majorina, M. A., Vorobeva, D. E., Nagibina, G. S., Veselova, V. R., Glukhova, K. A., Pak, M. A., Ivankov, D. N., Uversky, V. N., & Melnik, B. S. (2024) · Cell Communication and Signaling

Protein Structure and DynamicsHeat shock proteins research

Cited by 1