Holstege, Frank C.P.

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

Brazma, A., Hingamp, P., Quackenbush, J., Sherlock, G., Spellman, P., Stoeckert, C., Aach, J., Ansorge, W., Ball, C. A., Causton, H. C., et al. (2001) · Nature Genetics

Gene expression and cancer classificationResearch Data Management Practices

Cited by 4,109

Dissecting the regulatory circuitry of a eukaryotic genome

Holstege, F. C. P., Jennings, E. G., Wyrick, J. J., Lee, T. I., Hengartner, C. J., Green, M. R., Golub, T. R., Lander, E. S., & Young, R. A. (1998) · Cell

Genomics and Chromatin DynamicsFungal and yeast genetics research

Cited by 1,670

Toward a Comprehensive Atlas of the Physical Interactome of Saccharomyces cerevisiae

Collins, S. R., Kemmeren, P., Zhao, X.-C., Greenblatt, J. F., Spencer, F., Holstege, F. C. P., Weissman, J. S., & Krogan, N. J. (2007) · Molecular & Cellular Proteomics

Bioinformatics and Genomic NetworksAdvanced Proteomics Techniques and Applications

Cited by 795

Large-Scale Genetic Perturbations Reveal Regulatory Networks and an Abundance of Gene-Specific Repressors

Kemmeren, P., Sameith, K., van de Pasch, L. A. L., Benschop, J. J., Lenstra, T. L., Margaritis, T., O’Duibhir, E., Apweiler, E., van Wageningen, S., Ko, C. W., et al. (2014) · Cell

Gene Regulatory Network AnalysisFungal and yeast genetics research

Cited by 277

Canonical Wnt signaling negatively modulates regulatory T cell function.

van Loosdregt, J., Fleskens, V., Tiemessen, M. M., Mokry, M., van Boxtel, R., Meerding, J., Pals, C. E. G. M., Kurek, D., Baert, M. R. M., Delemarre, E. M., et al. (2013) · Immunity

T-cell and B-cell ImmunologyWnt/β-catenin signaling in development and cancer

Cited by 238

Mediator Expression Profiling Epistasis Reveals a Signal Transduction Pathway with Antagonistic Submodules and Highly Specific Downstream Targets

van de Peppel, J., Kettelarij, N., van Bakel, H., Kockelkorn, T. T. J. P., van Leenen, D., & Holstege, F. C. P. (2005) · Molecular Cell

Genomics and Chromatin DynamicsFungal and yeast genetics research

Cited by 211

Redox-sensitive cysteines bridge p300/CBP-mediated acetylation and FoxO4 activity

Dansen, T. B., Smits, L. M. M., van Triest, M. H., de Keizer, P. L. J., van Leenen, D., Koerkamp, M. G., Szypowska, A., Meppelink, A., Brenkman, A. B., Yodoi, J., et al. (2009) · Nature Chemical Biology

FOXO transcription factor regulationRedox biology and oxidative stress

Cited by 201

Optimized human intestinal organoid model reveals interleukin-22-dependency of paneth cell formation

He, G.-W., Lin, L., DeMartino, J., Zheng, X., Staliarova, N., Dayton, T., Begthel, H., van de Wetering, W. J., Bodewes, E., van Zon, J., et al. (2022) · Cell Stem Cell

IL-33, ST2, and ILC PathwaysInflammatory Bowel Disease

Cited by 178

From Structure to Systems: High-Resolution, Quantitative Genetic Analysis of RNA Polymerase II

Braberg, H., Jin, H., Moehle, E. A., Chan, Y. A., Wang, S., Shales, M., Benschop, J. J., Morris, J. H., Qiu, C., Hu, F., et al. (2013) · Cell

Genomics and Chromatin DynamicsRNA Research and Splicing

Cited by 143

Functional Overlap and Regulatory Links Shape Genetic Interactions between Signaling Pathways

van Wageningen, S., Kemmeren, P., Lijnzaad, P., Margaritis, T., Benschop, J. J., de Castro, I. J., van Leenen, D., Groot Koerkamp, M. J. A., Ko, C. W., Miles, A. J., et al. (2010) · Cell

Fungal and yeast genetics researchBioinformatics and Genomic Networks

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Sequence-Directed Action of RSC Remodeler and General Regulatory Factors Modulates +1 Nucleosome Position to Facilitate Transcription

Kubik, S., O’Duibhir, E., de Jonge, W. J., Mattarocci, S., Albert, B., Falcone, J.-L., Bruzzone, M. J., Holstege, F. C. P., & Shore, D. (2018) · Molecular Cell

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 133

E2F7 represses a network of oscillating cell cycle genes to control S-phase progression

Westendorp, B., Mokry, M., Groot Koerkamp, M. J. A., Holstege, F. C. P., Cuppen, E., & de Bruin, A. (2012) · Nucleic Acids Research

Cancer-related Molecular PathwaysGenomics and Chromatin Dynamics

Cited by 125

Suppression of Mediator is regulated by Cdk8-dependent Grr1 turnover of the Med3 coactivator

Gonzalez, D., Hamidi, N., Del Sol, R., Benschop, J. J., Nancy, T., Li, C., Francis, L., Tzouros, M., Krijgsveld, J., Holstege, F. C. P., et al. (2014) · Proceedings of the National Academy of Sciences

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

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