Toyoda, Atsushi

Initial sequencing and analysis of the human genome

International Human Genome Sequencing Consortium, Whitehead Institute for Biomedical Research, C. F. G. R., Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., et al. (2001) · Nature

Genomics and Phylogenetic StudiesGenetic Associations and Epidemiology

Cited by 24,216

Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer

Yachida, S., Mizutani, S., Shiroma, H., Shiba, S., Nakajima, T., Sakamoto, T., Watanabe, H., Masuda, K., Nishimoto, Y., Kubo, M., et al. (2019) · Nature Medicine

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 1,429

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

Kajitani, R., Toshimoto, K., Noguchi, H., Toyoda, A., Ogura, Y., Okuno, M., Yabana, M., Harada, M., Nagayasu, E., Maruyama, H., et al. (2014) · Genome Research

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 1,017

Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes

Kurokawa, K., Itoh, T., Kuwahara, T., Oshima, K., Toh, H., Toyoda, A., Takami, H., Morita, H., Sharma, V. K., Srivastava, T. P., et al. (2007) · DNA Research

Gut microbiota and healthGenomics and Phylogenetic Studies

Cited by 869

The prehistoric peopling of Southeast Asia

McColl, H., Racimo, F., Vinner, L., Demeter, F., Gakuhari, T., Moreno-Mayar, J. V., van Driem, G., Gram Wilken, U., Seguin-Orlando, A., de la Fuente Castro, C., et al. (2018) · Science

Forensic and Genetic ResearchPacific and Southeast Asian Studies

Cited by 517

Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein

Hashimoto, T., Horikawa, D. D., Saito, Y., Kuwahara, H., Kozuka-Hata, H., Shin-I, T., Minakuchi, Y., Ohishi, K., Motoyama, A., Aizu, T., et al. (2016) · Nature Communications

Tardigrade Biology and EcologyPolar Research and Ecology

Cited by 394

Two Novel Heat-Soluble Protein Families Abundantly Expressed in an Anhydrobiotic Tardigrade

Yamaguchi, A., Tanaka, S., Yamaguchi, S., Kuwahara, H., Takamura, C., Imajoh-Ohmi, S., Horikawa, D. D., Toyoda, A., Katayama, T., Arakawa, K., et al. (2012) · PLoS ONE

Tardigrade Biology and EcologyPhysiological and biochemical adaptations

Cited by 176

A biochemical landscape of A-to-I RNA editing in the human brain transcriptome

Sakurai, M., Ueda, H., Yano, T., Okada, S., Terajima, H., Mitsuyama, T., Toyoda, A., Fujiyama, A., Kawabata, H., & Suzuki, T. (2014) · Genome Research

RNA regulation and diseaseRNA modifications and cancer

Cited by 150

Novel Mitochondria-Targeted Heat-Soluble Proteins Identified in the Anhydrobiotic Tardigrade Improve Osmotic Tolerance of Human Cells

Tanaka, S., Tanaka, J., Miwa, Y., Horikawa, D. D., Katayama, T., Arakawa, K., Toyoda, A., Kubo, T., & Kunieda, T. (2015) · PLOS ONE

Tardigrade Biology and EcologyPhysiological and biochemical adaptations

Cited by 128

A Deeply Branching Thermophilic Bacterium with an Ancient Acetyl-CoA Pathway Dominates a Subsurface Ecosystem

Takami, H., Noguchi, H., Takaki, Y., Uchiyama, I., Toyoda, A., Nishi, S., Chee, G.-J., Arai, W., Nunoura, T., Itoh, T., et al. (2012) · PLoS ONE

Microbial Community Ecology and PhysiologyGenomics and Phylogenetic Studies

Cited by 115

Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses

Tanizawa, Y., Tada, I., Kobayashi, H., Endo, A., Maeno, S., Toyoda, A., Arita, M., Nakamura, Y., Sakamoto, M., Ohkuma, M., et al. (2018) · International Journal of Systematic and Evolutionary Microbiology

Probiotics and Fermented FoodsGenomics and Phylogenetic Studies

Cited by 52

Sequencing and chromosome-scale assembly of the giant Pleurodeles waltl genome

Brown, T., Elewa, A., Iarovenko, S., Subramanian, E., Araus, A. J., Petzold, A., Suzuki, M., Suzuki, K.-I. T., Hayashi, T., Toyoda, A., et al. (2022) · Cell Genomics

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 37

Unique H2-utilizing lithotrophy in serpentinite-hosted systems

Nobu, M. K., Nakai, R., Tamazawa, S., Mori, H., Toyoda, A., Ijiri, A., Suzuki, S., Kurokawa, K., Kamagata, Y., & Tamaki, H. (2023) · The ISME Journal

Microbial Community Ecology and PhysiologyOrigins and Evolution of Life

Cited by 32

The identification and functional implications of human-specific “fixed” amino acid substitutions in the glutamate receptor family

Goto, H., Watanabe, K., Araragi, N., Kageyama, R., Tanaka, K., Kuroki, Y., Toyoda, A., Hattori, M., Sakaki, Y., Fujiyama, A., et al. (2009) · BMC Evolutionary Biology

Neuroscience and Neuropharmacology ResearchEvolution and Genetic Dynamics

Cited by 16

Genome sequence and cell biological toolbox of the highly regenerative, coenocytic green feather alga Bryopsis

Ochiai, K. K., Hanawa, D., Ogawa, H. A., Tanaka, H., Uesaka, K., Edzuka, T., Shirae‐Kurabayashi, M., Toyoda, A., Itoh, T., & Goshima, G. (2024) · The Plant Journal

Protist diversity and phylogenyMarine and coastal plant biology

Cited by 13