Zhou, Yaoqi

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

Zhou, H., & Zhou, Y. (2002) · Protein Science

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 902

Critical assessment of protein intrinsic disorder prediction

Necci, M., Piovesan, D., Predictors, C., Hoque, M. T., Walsh, I., Iqbal, S., Vendruscolo, M., Sormanni, P., Wang, C., Raimondi, D., et al. (2021) · Nature Methods

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 343

Specific interactions for ab initio folding of protein terminal regions with secondary structures

Yang, Y., & Zhou, Y. (2008) · Proteins Structure Function and Bioinformatics

Protein Structure and DynamicsRNA and protein synthesis mechanisms

Cited by 245

A physical reference state unifies the structure-derived potential of mean force for protein folding and binding

Liu, S., Zhang, C., Zhou, H., & Zhou, Y. (2004) · Proteins Structure Function and Bioinformatics

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 193

SPOT-Disorder2: Improved Protein Intrinsic Disorder Prediction by Ensembled Deep Learning

Hanson, J., Paliwal, K. K., Litfin, T., & Zhou, Y. (2019) · Genomics, Proteomics & Bioinformatics

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 165

Multiple sequence alignment-based RNA language model and its application to structural inference

Zhang, Y., Lang, M., Jiang, J., Gao, Z., Xu, F., Litfin, T., Chen, K., Singh, J., Huang, X., Song, G., et al. (2024) · Nucleic Acids Research

RNA and protein synthesis mechanismsMachine Learning in Bioinformatics

Cited by 112

Multiple sequence-alignment-based RNA language model and its application to structural inference

Zhang, Y., Lang, M., Jiang, J., Gao, Z., Xu, F., Litfin, T., Chen, K., Singh, J., Huang, X., Song, G., et al. (2023) · Nucleic Acids Research

RNA and protein synthesis mechanismsMachine Learning in Bioinformatics

Cited by 112

Predicting RNA structures and functions by artificial intelligence.

Zhang, J., Lang, M., Zhou, Y., & Zhang, Y. (2024) · Trends in Genetics

RNA and protein synthesis mechanismsRNA regulation and disease

Cited by 48

RNA tertiary structure modeling with BRiQ potential in CASP15

Chen, K., Zhou, Y., Wang, S., & Xiong, P. (2023) · Proteins: Structure, Function, and Bioinformatics

RNA and protein synthesis mechanismsProtein Structure and Dynamics

Cited by 37

SPIN-CGNN: Improved fixed backbone protein design with contact map-based graph construction and contact graph neural network

Zhang, X., Yin, H., Ling, F., Zhan, J., & Zhou, Y. (2023) · PLOS Computational Biology

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 15