DeRisi, Joseph L.

Autoantibodies against type I IFNs in patients with life-threatening COVID-19

Bastard, P., Rosen, L. B., Zhang, Q., Michailidis, E., Hoffmann, H.-H., Zhang, Y., Dorgham, K., Philippot, Q., Rosain, J., Béziat, V., et al. (2020) · Science

interferon and immune responsesSARS-CoV-2 and COVID-19 Research

Cited by 2,662

Inborn errors of type I IFN immunity in patients with life-threatening COVID-19

Zhang, Q., Bastard, P., Liu, Z., Le Pen, J., Moncada-Velez, M., Chen, J., Ogishi, M., Sabli, I. K. D., Hodeib, S., Korol, C., et al. (2020) · Science

interferon and immune responsesSARS-CoV-2 and COVID-19 Research

Cited by 2,229

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

Newman, J. R. S., Ghaemmaghami, S., Ihmels, J., Breslow, D. K., Noble, M., DeRisi, J. L., & Weissman, J. S. (2006) · Nature

Gene Regulatory Network AnalysisFungal and yeast genetics research

Cited by 1,483

Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis

Wilson, M. R., Sample, H. A., Zorn, K. C., Arevalo, S., Yu, G., Neuhaus, J., Federman, S., Stryke, D., Briggs, B., Langelier, C., et al. (2019) · New England Journal of Medicine

Bacterial Identification and Susceptibility TestingBacterial Infections and Vaccines

Cited by 1,067

Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing

Wilson, M. R., Naccache, S. N., Samayoa, E., Biagtan, M., Bashir, H., Yu, G., Salamat, S. M., Somasekar, S., Federman, S., Miller, S., et al. (2014) · New England Journal of Medicine

Leptospirosis research and findingsBacterial Identification and Susceptibility Testing

Cited by 977

Clonally expanded B cells in multiple sclerosis bind EBV EBNA1 and GlialCAM

Lanz, T. V., Brewer, R. C., Ho, P. P., Moon, J.-S., Jude, K. M., Fernandez, D., Fernandes, R. A., Gomez, A. M., Nadj, G.-S., Bartley, C. M., et al. (2022) · Nature

Multiple Sclerosis Research StudiesT-cell and B-cell Immunology

Cited by 908

Identification of a Novel Gammaretrovirus in Prostate Tumors of Patients Homozygous for R462Q RNASEL Variant

Urisman, A., Molinaro, R. J., Fischer, N., Plummer, S. J., Casey, G., Klein, E. A., Malathi, K., Magi-Galluzzi, C., Tubbs, R. R., Ganem, D., et al. (2006) · PLoS Pathogens

T-cell and Retrovirus StudiesViral-associated cancers and disorders

Cited by 577

Zika virus cell tropism in the developing human brain and inhibition by azithromycin

Retallack, H., Di Lullo, E., Arias, C., Knopp, K. A., Laurie, M. T., Sandoval-Espinosa, C., Mancia Leon, W. R., Krencik, R., Ullian, E. M., Spatazza, J., et al. (2016) · Proceedings of the National Academy of Sciences

Mosquito-borne diseases and controlVirology and Viral Diseases

Cited by 506

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

Naccache, S. N., Federman, S., Veeraraghavan, N., Zaharia, M., Lee, D., Samayoa, E., Bouquet, J., Greninger, A. L., Luk, K.-C., Enge, B., et al. (2014) · Genome Research

Genomics and Phylogenetic StudiesBacterial Identification and Susceptibility Testing

Cited by 460

Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults

Langelier, C., Kalantar, K. L., Moazed, F., Wilson, M. R., Crawford, E. D., Deiss, T., Belzer, A., Bolourchi, S., Caldera, S., Fung, M., et al. (2018) · Proceedings of the National Academy of Sciences

Bacterial Identification and Susceptibility TestingPneumonia and Respiratory Infections

Cited by 411

Viral Infection in Acute Exacerbation of Idiopathic Pulmonary Fibrosis

Wootton, S. C., Kim, D. S., Kondoh, Y., Chen, E., Lee, J. S., Song, J. W., Huh, J. W., Taniguchi, H., Chiu, C., Boushey, H., et al. (2011) · American Journal of Respiratory and Critical Care Medicine

Interstitial Lung Diseases and Idiopathic Pulmonary FibrosisOccupational and environmental lung diseases

Cited by 285

Transcriptome-wide characterization of the eIF4A signature highlights plasticity in translation regulation

Rubio, C. A., Weisburd, B., Holderfield, M., Arias, C., Fang, E., DeRisi, J. L., & Fanidi, A. (2014) · Genome Biology

RNA and protein synthesis mechanismsPI3K/AKT/mTOR signaling in cancer

Cited by 200

Structure of the transcriptional network controlling white‐opaque switching in C andida albicans

Hernday, A. D., Lohse, M. B., Fordyce, P. M., Nobile, C. J., DeRisi, J. L., & Johnson, A. D. (2013) · Molecular Microbiology

Fungal and yeast genetics researchGene Regulatory Network Analysis

Cited by 131

The genome-wide expression response to telomerase deletion in Saccharomyces cerevisiae

Nautiyal, S., DeRisi, J. L., & Blackburn, E. H. (2002) · Proceedings of the National Academy of Sciences

Telomeres, Telomerase, and SenescenceGenetics, Aging, and Longevity in Model Organisms

Cited by 96

Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting

Mavor, D., Barlow, K., Thompson, S., Barad, B. A., Bonny, A. R., Cario, C. L., Gaskins, G., Liu, Z., Deming, L., Axen, S. D., et al. (2016) · eLife

Ubiquitin and proteasome pathwaysEvolution and Genetic Dynamics

Cited by 89

Discovery and Genomic Characterization of a Novel Henipavirus, Angavokely Virus, from Fruit Bats in Madagascar

Madera, S., Kistler, A., Ranaivoson, H. C., Ahyong, V., Andrianiaina, A., Andry, S., Raharinosy, V., Randriambolamanantsoa, T. H., Ravelomanantsoa, N. A. F., Tato, C. M., et al. (2022) · Journal of Virology

Virology and Viral DiseasesViral Infections and Outbreaks Research

Cited by 74

Discovery and Genomic Characterization of a Novel Henipavirus, Angavokely virus, from fruit bats in Madagascar

Madera, S., Kistler, A., Ranaivoson, H. C., Ahyong, V., Andrianiaina, A., Andry, S., Raharinosy, V., Randriambolamanantsoa, T. H., Fifi Ravelomanantsoa, N. A., Tato, C. M., et al. (2022) · Journal of Virology

Virology and Viral DiseasesViral Infections and Outbreaks Research

Cited by 74

Estimation of Secondary Household Attack Rates for Emergent Spike L452R Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants Detected by Genomic Surveillance at a Community-Based Testing Site in San Francisco

Peng, J., Liu, J., Mann, S. A., Mitchell, A. M., Laurie, M. T., Sunshine, S., Pilarowski, G., Ayscue, P., Kistler, A., Vanaerschot, M., et al. (2022) · Clinical Infectious Diseases

SARS-CoV-2 and COVID-19 ResearchCOVID-19 epidemiological studies

Cited by 41

Genomic and serologic characterization of enterovirus A71 brainstem encephalitis

Leon, K. E., Schubert, R. D., Casas-Alba, D., Hawes, I. A., Ramachandran, P. S., Ramesh, A., Pak, J. E., Wu, W., Cheung, C. K., Crawford, E. D., et al. (2020) · Neurology Neuroimmunology & Neuroinflammation

Infectious Encephalopathies and EncephalitisViral Infections and Immunology Research

Cited by 32