Durairaj, Janani

A structural biology community assessment of AlphaFold2 applications

Akdel, M., Pires, D. E. V., Pardo, E. P., Jänes, J., Zalevsky, A. O., Mészáros, B., Bryant, P., Good, L. L., Laskowski, R. A., Pozzati, G., et al. (2022) · Nature Structural & Molecular Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 675

A structural biology community assessment of AlphaFold 2 applications

Akdel, M., Pires, D. E. V., Porta Pardo, E., Jänes, J., Zalevsky, A. O., Mészáros, B., Bryant, P., Good, L. L., Laskowski, R. A., Pozzati, G., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory)

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 122

Embedding-based alignment: combining protein language models and alignment approaches to detect structural similarities in the twilight-zone

Pantolini, L., Studer, G., Pereira, J., Durairaj, J., & Schwede, T. (2022) · Bioinformatics

Machine Learning in BioinformaticsGenomics and Phylogenetic Studies

Cited by 55

Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone

Pantolini, L., Studer, G., Pereira, J., Durairaj, J., Tauriello, G., & Schwede, T. (2024) · Bioinformatics

Machine Learning in BioinformaticsGenomics and Phylogenetic Studies

Cited by 55

New prediction categories in CASP15

Kryshtafovych, A., Antczak, M., Szachniuk, M., Zok, T., Kretsch, R. C., Rangan, R., Pham, P., Das, R., Robin, X., Studer, G., et al. (2023) · Proteins: Structure, Function, and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 54

Structural implications of BK polyomavirus sequence variations in the major viral capsid protein Vp1 and large T-antigen: a computational study

Durairaj, J., Follonier, O. M., Leuzinger, K., Alexander, L. T., Wilhelm, M., Pereira, J., Hillenbrand, C. A., Weissbach, F. H., Schwede, T., & Hirsch, H. H. (2023) · mSphere

Polyomavirus and related diseasesvaccines and immunoinformatics approaches

Cited by 23

Evaluating generalization in protein–ligand cofolding methods

Škrinjar, P., Eberhardt, J., Studer, G., Tauriello, G., Schwede, T., & Durairaj, J. (2026) · Nature Structural & Molecular Biology

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 22

The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes

Odai, R., Leemann, M., Al-Murad, T., Abdullah, M., Shyrokova, L., Tenson, T., Hauryliuk, V., Durairaj, J., Pereira, J., & Atkinson, G. C. (2025) · Science Advances

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 16

The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes

Odai, R., Leemann, M., Al-Murad, T., Abdullah, M., Shyrokova, L., Tenson, T., Hauryliuk, V., Durairaj, J., Pereira, J., & Atkinson, G. C. (2025) · Science Advances

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 16

A fully automated benchmarking suite to compare macromolecular complexes

Studer, G., Robin, X., Bienert, S., Durairaj, J., Škrinjar, P., Tauriello, G., Waterhouse, A. M., & Schwede, T. (2026) · Nature Methods

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 10

New prediction categories in CASP15

Kryshtafovych, A., Antczak, M., Szachniuk, M., Zok, T., Kretsch, R. C., Rangan, R., Pham, P., Das, R., Robin, X., Studer, G., et al. (2023)

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 4