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New prediction categories in CASP15
Open accessPreprint — published as 10.1002/prot.26515 · Paper page
Abstract
Prediction categories in the Critical Assessment of Structure Prediction (CASP) experiments change with the need to address specific problems in structure modeling. In CASP15, four new prediction categories were introduced: RNA structure, ligand-protein complexes, accuracy of oligomeric structures and their interfaces, and ensembles of alternative conformations. This paper lists technical specifications for these categories and describes their integration in the CASP data management system.
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Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
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Metadata
- Authors
- Kryshtafovych, A., Antczak, M., Szachniuk, M., Zok, T., Kretsch, R. C., Rangan, R., Pham, P., Das, R., Robin, X., Studer, G., Durairaj, J., Eberhardt, J., Sweeney, A., Topf, M., Schwede, T., Fidelis, K., & Moult, J.
- Affiliations
- University of California, Davis (US)
- Stanford Medicine (US)
- Politechnika Poznanska Instytut Informatyki
- University of Basel (CH)
- Howard Hughes Medical Institute (US)
- SIB Swiss Institute of Bioinformatics (CH)
- Universitat Basel Department Biozentrum
- Institute for Bioscience and Biotechnology Research (US)
- Corresponding author
- Kryshtafovych, Andriy
- ORCID
- Publisher
- Wiley
- Published
- 2023-05-10
- OpenAlex
- W4376114632
- Cited by
- 4
- References
- 1
- Citations by year
- 2023: 4
- Type
- posted content
- Language
- en
- Open access
- green
- doi.org
- Licence
- cc-by
- Locations
- Desy publication database (The Deutsches Elektronen-Synchrotron) (submittedVersion, cc-by)
- Funders
- Howard Hughes Medical Institute
- Wellcome Trust (209250/Z/17/Z), Z/17/Z)
- National Institutes of Health
- Stanford Bio-X
- Leibniz-Gemeinschaft (W6/2018)
- National Institute of General Medical Sciences (R01GM100482 to KF, GM122579, R35GM122579, R01GM100482)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Drug Discovery › Computational Drug Discovery Methods
- Keywords
- CASP15, protein structure prediction, RNA structure prediction, ligand-protein complexes, alternative conformations, ensembles, data management systems
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