Koller, Daphne

The Immunological Genome Project: networks of gene expression in immune cells

The Immunological Genome Project Consortium, Heng, T. S. P., Painter, M. W., Elpek, K., Lukacs-Kornek, V., Mauermann, N., Turley, S. J., Koller, D., Kim, F. S., Wagers, A. J., et al. (2008) · Nature Immunology

Bioinformatics and Genomic NetworksGenomics and Chromatin Dynamics

Cited by 1,864

SCAPE: shape completion and animation of people

Anguelov, D., Srinivasan, P., Koller, D., Thrun, S., Rodgers, J., & Davis, J. (2005) · ACM Transactions on Graphics

3D Shape Modeling and AnalysisHuman Motion and Animation

Cited by 1,489

A module map showing conditional activity of expression modules in cancer

Segal, E., Friedman, N., Koller, D., & Regev, A. (2004) · Nature Genetics

Gene expression and cancer classificationBioinformatics and Genomic Networks

Cited by 685

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

Battle, A., Mostafavi, S., Zhu, X., Potash, J. B., Weissman, M. M., McCormick, C., Haudenschild, C. D., Beckman, K. B., Shi, J., Mei, R., et al. (2014) · Genome Research

Genetic Associations and EpidemiologyRNA Research and Splicing

Cited by 547

Polarization of the Effects of Autoimmune and Neurodegenerative Risk Alleles in Leukocytes

Raj, T., Rothamel, K., Mostafavi, S., Ye, C., Lee, M. N., Replogle, J. M., Feng, T., Lee, M., Asinovski, N., Frohlich, I., et al. (2014) · Science

Genetic Associations and EpidemiologyGenomics and Chromatin Dynamics

Cited by 506

Peer and self assessment in massive online classes

Kulkarni, C., Wei, K. P., Le, H., Chia, D., Papadopoulos, K., Cheng, J., Koller, D., & Klemmer, S. R. (2013) · ACM Transactions on Computer-Human Interaction

Student Assessment and FeedbackOnline Learning and Analytics

Cited by 390

Conservation and divergence in the transcriptional programs of the human and mouse immune systems

Shay, T., Jojic, V., Zuk, O., Rothamel, K., Puyraimond-Zemmour, D., Feng, T., Wakamatsu, E., Benoist, C., Koller, D., Regev, A., et al. (2013) · Proceedings of the National Academy of Sciences

Genomics and Chromatin DynamicsBioinformatics and Genomic Networks

Cited by 359

Effect of predicted protein-truncating genetic variants on the human transcriptome

Rivas, M. A., Pirinen, M., Conrad, D. F., Lek, M., Tsang, E. K., Karczewski, K. J., Maller, J. B., Kukurba, K. R., DeLuca, D. S., Fromer, M., et al. (2015) · Science

Genomics and Rare DiseasesRNA Research and Splicing

Cited by 313

The Genotype-Tissue Expression (GTEx) project

Lonsdale, J., Thomas, J., Salvatore, M., Phillips, R., Lo, E., Shad, S., Hasz, R., Walters, G., Garcia, F., Young, N., et al. (2013) · Nature Genetics

Genetic Associations and EpidemiologyGenomics and Chromatin Dynamics

Cited by 263

Tuned Models of Peer Assessment in MOOCs

Piech, C., Huang, J., Chen, Z., Do, C., Ng, A., & Koller, D. (2013) · arXiv

Online Learning and AnalyticsStudent Assessment and Feedback

Cited by 262

Type I interferon signaling genes in recurrent major depression: increased expression detected by whole-blood RNA sequencing

Mostafavi, S., Battle, A., Zhu, X., Potash, J. B., Weissman, M. M., Shi, J., Beckman, K., Haudenschild, C., McCormick, C., Mei, R., et al. (2014) · Molecular Psychiatry

Tryptophan and brain disordersTreatment of Major Depression

Cited by 187

Apoptosis and other immune biomarkers predict influenza vaccine responsiveness

Furman, D., Jojic, V., Kidd, B., Shen‐Orr, S., Price, J., Jarrell, J., Tse, T., Huang, H., Lund, P., Maecker, H. T., et al. (2013) · Molecular Systems Biology

Influenza Virus Research StudiesImmune responses and vaccinations

Cited by 184

Sharing and Specificity of Co-expression Networks across 35 Human Tissues

Pierson, E., the GTEx Consortium, Koller, D., Battle, A., & Mostafavi, S. (2015) · PLOS Computational Biology

Bioinformatics and Genomic NetworksGene Regulatory Network Analysis

Cited by 177

Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action

Hillenmeyer, M. E., Ericson, E., Davis, R. W., Nislow, C., Koller, D., & Giaever, G. (2010) · Genome Biology

Fungal and yeast genetics researchComputational Drug Discovery Methods

Cited by 112