Neff, Norma F.
Chan Zuckerberg Biohub San Francisco
20 papers on CoChatORCID 0000-0001-7141-5420
Most cited papers
- Verified
Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
Treutlein, B., Brownfield, D. G., Wu, A. R., Neff, N. F., Mantalas, G. L., Espinoza, F. H., Desai, T. J., Krasnow, M. A., & Quake, S. R. (2014) · Nature
Single-cell and spatial transcriptomicsNeonatal Respiratory Health Research
Cited by 1,342
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A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
The Tabula Muris Consortium, Almanzar, N., Antony, J., Baghel, A. S., Bakerman, I., Bansal, I., Barres, B. A., Beachy, P. A., Berdnik, D., Bilen, B., et al. (2020) · Nature
Single-cell and spatial transcriptomicsGenetics, Aging, and Longevity in Model Organisms
Cited by 1,247
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BASC, a super complex of BRCA1-associated proteins involved in the recognition and repair of aberrant DNA structures.
Wang, Y., Cortez, D., Yazdi, P., Neff, N., Elledge, S. J., & Qin, J. (2000) · Genes & Development
DNA Repair MechanismsBRCA gene mutations in cancer
Cited by 1,221
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Developmental Heterogeneity of Microglia and Brain Myeloid Cells Revealed by Deep Single-Cell RNA Sequencing
Li, Q., Cheng, Z., Zhou, L., Darmanis, S., Neff, N. F., Okamoto, J., Gulati, G., Bennett, M. L., Sun, L. O., Clarke, L. E., et al. (2019) · Neuron
Neuroinflammation and Neurodegeneration MechanismsSingle-cell and spatial transcriptomics
Cited by 1,129
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The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
The Tabula Sapiens Consortium*, Jones, R. C., Karkanias, J., Krasnow, M. A., Pisco, A. O., Quake, S. R., Salzman, J., Yosef, N., Bulthaup, B., Brown, P., et al. (2022) · Science
Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics
Cited by 1,056
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The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line
Xu, X., Nagarajan, H., Lewis, N. E., Pan, S., Cai, Z., Liu, X., Chen, W., Xie, M., Wang, W., Hammond, S., et al. (2011) · Nature Biotechnology
Viral Infectious Diseases and Gene Expression in InsectsFungal and yeast genetics research
Cited by 785
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Quantitative assessment of single-cell RNA-sequencing methods
Wu, A. R., Neff, N. F., Kalisky, T., Dalerba, P., Treutlein, B., Rothenberg, M. E., Mburu, F. M., Mantalas, G. L., Sim, S., Clarke, M. F., et al. (2014) · Nature Methods
Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies
Cited by 696
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Clinical assessment incorporating a personal genome
Ashley, E. A., Butte, A. J., Wheeler, M. T., Chen, R., Klein, T. E., Dewey, F. E., Dudley, J. T., Ormond, K. E., Pavlovic, A., Morgan, A. A., et al. (2010) · The Lancet
Genomics and Rare DiseasesGenetic Associations and Epidemiology
Cited by 674
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Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons
Wapinski, O. L., Vierbuchen, T., Qu, K., Lee, Q. Y., Chanda, S., Fuentes, D. R., Giresi, P. G., Ng, Y. H., Marro, S., Neff, N. F., et al. (2013) · Cell
Pluripotent Stem Cells ResearchNeurogenesis and neuroplasticity mechanisms
Cited by 627
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Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation
Reddy, T. E., Pauli, F., Sprouse, R. O., Neff, N. F., Newberry, K. M., Garabedian, M. J., & Myers, R. M. (2009) · Genome Research
Estrogen and related hormone effectsGenomics and Chromatin Dynamics
Cited by 543
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Molecular characterization of selectively vulnerable neurons in Alzheimer’s disease
Leng, K., Li, E., Eser, R., Piergies, A., Sit, R., Tan, M., Neff, N., Li, S. H., Rodriguez, R. D., Suemoto, C. K., et al. (2021) · Nature Neuroscience
Alzheimer's disease research and treatmentsDementia and Cognitive Impairment Research
Cited by 485
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Temporal Response of the Human Virome to Immunosuppression and Antiviral Therapy
De Vlaminck, I., Khush, K. K., Strehl, C., Kohli, B., Luikart, H., Neff, N. F., Okamoto, J., Snyder, T. M., Cornfield, D. N., Nicolls, M. R., et al. (2013) · Cell
Bacteriophages and microbial interactionsCytomegalovirus and herpesvirus research
Cited by 471
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Cellular Taxonomy of the Mouse Striatum as Revealed by Single-Cell RNA-Seq
Gokce, O., Stanley, G. M., Treutlein, B., Neff, N. F., Camp, J. G., Malenka, R. C., Rothwell, P. E., Fuccillo, M. V., Südhof, T. C., & Quake, S. R. (2016) · Cell Reports
Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research
Cited by 430
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Aged skeletal stem cells generate an inflammatory degenerative niche
Ambrosi, T. H., Marecic, O., McArdle, A., Sinha, R., Gulati, G. S., Tong, X., Wang, Y., Steininger, H. M., Hoover, M. Y., Koepke, L. S., et al. (2021) · Nature
Bone Metabolism and DiseasesMesenchymal stem cell research
Cited by 392
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Defining human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis
Churko, J. M., Garg, P., Treutlein, B., Venkatasubramanian, M., Wu, H., Lee, J., Wessells, Q. N., Chen, S.-Y., Chen, W.-Y., Chetal, K., et al. (2018) · Nature Communications
Pluripotent Stem Cells ResearchSingle-cell and spatial transcriptomics
Cited by 207
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Molecular hallmarks of heterochronic parabiosis at single-cell resolution
Pálovics, R., Keller, A., Schaum, N., Tan, W., Fehlmann, T., Borja, M., Kern, F., Bonanno, L., Calcuttawala, K., Webber, J., et al. (2022) · Nature
Genetics, Aging, and Longevity in Model OrganismsSingle-cell and spatial transcriptomics
Cited by 153
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Cell types of origin of the cell-free transcriptome
Vorperian, S. K., Moufarrej, M. N., Tabula Sapiens Consortium, Overall Project Direction and Coordination, Jones, R. C., Karkanias, J., Krasnow, M., Pisco, A. O., Quake, S. R., Salzman, J., et al. (2022) · Nature Biotechnology
Single-cell and spatial transcriptomicsGene expression and cancer classification
Cited by 116
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Characterizing expression changes in noncoding RNAs during aging and heterochronic parabiosis across mouse tissues
Wagner, V., Kern, F., Hahn, O., Schaum, N., Ludwig, N., Fehlmann, T., Engel, A., Henn, D., Rishik, S., Isakova, A., et al. (2024) · Nature Biotechnology
Genetics, Aging, and Longevity in Model OrganismsMicroRNA in disease regulation
Cited by 72
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Assembly of gut-derived bacterial communities follows “early-bird” resource utilization dynamics
Aranda-Díaz, A., Willis, L., Nguyen, T. H., Ho, P.-Y., Vila, J., Thomsen, T., Chavez, T., Yan, R., Yu, F. B., Neff, N., et al. (2023) · Cell Systems
Gut microbiota and healthMicrobial Community Ecology and Physiology
Cited by 35
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PIP4K2C inhibition reverses autophagic flux impairment induced by SARS-CoV-2
Karim, M., Mishra, M., Lo, C.-W., Saul, S., Cagirici, H. B., Gourdelier, M., Ghita, L., Ojha, A., Tran, D. H. N., Agrawal, A., et al. (2025) · Nature Communications
SARS-CoV-2 and COVID-19 ResearchAutophagy in Disease and Therapy
Cited by 16
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