Schmutz, Jeremy

Initial sequencing and analysis of the human genome

International Human Genome Sequencing Consortium, Whitehead Institute for Biomedical Research, C. F. G. R., Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., et al. (2001) · Nature

Genomics and Phylogenetic StudiesGenetic Associations and Epidemiology

Cited by 24,216

Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles.

Colosimo, P. F., Hosemann, K. E., Balabhadra, S., Villarreal, G., Dickson, M., Grimwood, J., Schmutz, J., Myers, R. M., Schluter, D., & Kingsley, D. M. (2005) · Science

Evolution and Genetic DynamicsDevelopmental Biology and Gene Regulation

Cited by 1,448

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

Chan, Y. F., Marks, M. E., Jones, F. C., Villarreal, G., Shapiro, M. D., Brady, S. D., Southwick, A. M., Absher, D. M., Grimwood, J., Schmutz, J., et al. (2010) · Science

Developmental Biology and Gene RegulationEvolution and Genetic Dynamics

Cited by 1,020

Genome evolution in the allotetraploid frog Xenopus laevis

Session, A. M., Uno, Y., Kwon, T., Chapman, J. A., Toyoda, A., Takahashi, S., Fukui, A., Hikosaka, A., Suzuki, A., Kondo, M., et al. (2016) · Nature

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 949

The Trichoplax genome and the nature of placozoans

Srivastava, M., Begovic, E., Chapman, J., Putnam, N. H., Hellsten, U., Kawashima, T., Kuo, A., Mitros, T., Salamov, A., Carpenter, M. L., et al. (2008) · Nature

Marine Invertebrate Physiology and EcologyGenomics and Phylogenetic Studies

Cited by 889

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

Palenik, B., Grimwood, J., Aerts, A., Rouzé, P., Salamov, A., Putnam, N., Dupont, C., Jorgensen, R., Derelle, E., Rombauts, S., et al. (2007) · Proceedings of the National Academy of Sciences

Protist diversity and phylogenyChromosomal and Genetic Variations

Cited by 625

The barley pan-genome reveals the hidden legacy of mutation breeding

Jayakodi, M., Padmarasu, S., Haberer, G., Bonthala, V. S., Gundlach, H., Monat, C., Lux, T., Kamal, N., Lang, D., Himmelbach, A., et al. (2020) · Nature

Wheat and Barley Genetics and PathologyChromosomal and Genetic Variations

Cited by 565

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

Curtis, B. A., Tanifuji, G., Burki, F., Gruber, A., Irimia, M., Maruyama, S., Arias, M. C., Ball, S. G., Gile, G. H., Hirakawa, Y., et al. (2012) · Nature

Protist diversity and phylogenyChromosomal and Genetic Variations

Cited by 417

Genome Project Standards in a New Era of Sequencing

Chain, P. S. G., Grafham, D. V., Fulton, R. S., FitzGerald, M. G., Hostetler, J., Muzny, D., Ali, J., Birren, B., Bruce, D. C., Buhay, C., et al. (2009) · Science

Genomics and Phylogenetic StudiesResearch Data Management Practices

Cited by 400

GENESPACE tracks regions of interest and gene copy number variation across multiple genomes

Lovell, J. T., Sreedasyam, A., Schranz, M. E., Wilson, M., Carlson, J. W., Harkess, A., Emms, D., Goodstein, D. M., & Schmutz, J. (2022) · eLife

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 391

Deeply conserved synteny resolves early events in vertebrate evolution

Simakov, O., Marlétaz, F., Yue, J.-X., O’Connell, B., Jenkins, J., Brandt, A., Calef, R., Tung, C.-H., Huang, T.-K., Schmutz, J., et al. (2020) · Nature Ecology & Evolution

Chromosomal and Genetic VariationsGenome Rearrangement Algorithms

Cited by 363

Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?

Ševčíková, T., Horák, A., Klimeš, V., Zbránková, V., Demir-Hilton, E., Sudek, S., Jenkins, J., Schmutz, J., Přibyl, P., Fousek, J., et al. (2015) · Scientific Reports

Protist diversity and phylogenyPhotosynthetic Processes and Mechanisms

Cited by 125

Young inversion with multiple linked QTLs under selection in a hybrid zone

Lee, C.-R., Wang, B., Mojica, J. P., Mandáková, T., Prasad, K. V. S. K., Goicoechea, J. L., Perera, N., Hellsten, U., Hundley, H. N., Johnson, J., et al. (2017) · Nature Ecology & Evolution

Chromosomal and Genetic VariationsEvolution and Genetic Dynamics

Cited by 119