Feist, Adam M

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

Schellenberger, J., Que, R., Fleming, R. M. T., Thiele, I., Orth, J. D., Feist, A. M., Zielinski, D. C., Bordbar, A., Lewis, N. E., Rahmanian, S., et al. (2011) · Nature Protocols

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 1,835

A comprehensive genome-scale reconstruction of Escherichia coli metabolism—2011

Orth, J. D., Conrad, T. M., Na, J., Lerman, J. A., Nam, H., Feist, A. M., & Palsson, B. Ø. (2011) · Molecular Systems Biology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 1,006

Tracing compartmentalized NADPH metabolism in the cytosol and mitochondria of mammalian cells

Lewis, C. A., Parker, S. J., Fiske, B. P., McCloskey, D., Gui, D. Y., Green, C. R., Vokes, N. I., Feist, A. M., Vander Heiden, M. G., & Metallo, C. M. (2014) · Molecular Cell

Redox biology and oxidative stressCancer, Hypoxia, and Metabolism

Cited by 562

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

Feist, A. M., & Palsson, B. Ø. (2008) · Nature Biotechnology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 545

MEMOTE for standardized genome-scale metabolic model testing

Lieven, C., Beber, M. E., Olivier, B. G., Bergmann, F. T., Ataman, M., Babaei, P., Bartell, J. A., Blank, L. M., Chauhan, S., Correia, K., et al. (2020) · Nature Biotechnology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 509

Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli

Feist, A. M., Zielinski, D. C., Orth, J. D., Schellenberger, J., Herrgard, M. J., & Palsson, B. Ø. (2010) · Metabolic Engineering

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 238

Maximizing Biomass Productivity and Cell Density of Chlorella Vulgaris by Using Light-Emitting Diode-Based Photobioreactor

Fu, W., Gudmundsson, O., Feist, A. M., Herjolfsson, G., Brynjolfsson, S., & Palsson, B. Ø. (2012) · Journal of Biotechnology

Algal biology and biofuel productionMicrobial Metabolic Engineering and Bioproduction

Cited by 170

Next-generation genome-scale models for metabolic engineering

King, Z. A., Lloyd, C. J., Feist, A. M., & Palsson, B. O. (2015) · Current Opinion in Biotechnology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 157

Multi-omic data integration enables discovery of hidden biological regularities

Ebrahim, A., Brunk, E., Tan, J., O'Brien, E. J., Kim, D., Szubin, R., Lerman, J. A., Lechner, A., Sastry, A., Bordbar, A., et al. (2016) · Nature Communications

Bioinformatics and Genomic NetworksMicrobial Metabolic Engineering and Bioproduction

Cited by 155

Do genome-scale models need exact solvers or clearer standards?

Ebrahim, A., Almaas, E., Bauer, E., Bordbar, A., Burgard, A. P., Chang, R. L., Dräger, A., Famili, I., Feist, A. M., Fleming, R. M., et al. (2015) · Molecular Systems Biology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 57

Adaptive evolution of a minimal organism with a synthetic genome

Sandberg, T. E., Wise, K. S., Dalldorf, C., Szubin, R., Feist, A. M., Glass, J. I., & Palsson, B. O. (2023) · iScience

Evolution and Genetic DynamicsMicrobial Metabolic Engineering and Bioproduction

Cited by 23