Holm, Liisa

Pfam: the protein families database

Finn, R. D., Bateman, A., Clements, J., Coggill, P., Eberhardt, R. Y., Eddy, S. R., Heger, A., Hetherington, K., Holm, L., Mistry, J., et al. (2014) · Nucleic Acids Research

Genomics and Phylogenetic StudiesEnzyme Structure and Function

Cited by 6,148

Protein Structure Comparison by Alignment of Distance Matrices

Holm, L., & Sander, C. (1993) · Journal of Molecular Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 3,984

The Pfam protein families database

Punta, M., Coggill, P. C., Eberhardt, R. Y., Mistry, J., Tate, J., Boursnell, C., Pang, N., Forslund, K., Ceric, G., Clements, J., et al. (2012) · Nucleic Acids Research

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 3,719

Dali server: conservation mapping in 3D

Holm, L., & Rosenstr�m, P. (2010) · Nucleic Acids Research

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 3,640

The Pfam protein families database

Finn, R. D., Mistry, J., Tate, J., Coggill, P., Heger, A., Pollington, J. E., Gavin, O. L., Gunasekaran, P., Ceric, G., Forslund, K., et al. (2010) · Nucleic Acids Research

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 2,694

A large-scale evaluation of computational protein function prediction

Radivojac, P., Clark, W. T., Oron, T. R., Schnoes, A. M., Wittkop, T., Sokolov, A., Graim, K., Funk, C., Verspoor, K., Ben-Hur, A., et al. (2013) · Nature Methods

Bioinformatics and Genomic NetworksMachine Learning in Bioinformatics

Cited by 1,028

DaliLite workbench for protein structure comparison

Holm, L., & Park, J. (2000) · Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 888

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Zhou, N., Jiang, Y., Bergquist, T. R., Lee, A. J., Kacsoh, B. Z., Crocker, A. W., Lewis, K. A., Georghiou, G., Nguyen, H. N., Hamid, M. N., et al. (2019) · Genome Biology

Bioinformatics and Genomic NetworksGenomics and Phylogenetic Studies

Cited by 452

Dali/FSSP classification of three-dimensional protein folds

Holm, L., & Sander, C. (1997) · Nucleic Acids Research

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 421

Global analysis of aging-related protein structural changes uncovers enzyme polymerization-based control of longevity

Paukštytė, J., López Cabezas, R. M., Feng, Y., Tong, K., Schnyder, D., Elomaa, E., Gregorova, P., Doudin, M., Särkkä, M., Sarameri, J., et al. (2023) · Molecular Cell

Genetics, Aging, and Longevity in Model OrganismsAdvanced Proteomics Techniques and Applications

Cited by 35