Bittinger, Kyle

QIIME allows analysis of high-throughput community sequencing data

Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 34,887

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., et al. (2019) · Nature Biotechnology

Scientific Computing and Data ManagementGut microbiota and health

Cited by 23,742

Linking long-term dietary patterns with gut microbial enterotypes

Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S. A., Bewtra, M., Knights, D., Walters, W. A., Knight, R., et al. (2011) · Science

Gut microbiota and healthNutritional Studies and Diet

Cited by 6,513

Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract

Charlson, E. S., Bittinger, K., Haas, A. R., Fitzgerald, A. S., Frank, I., Yadav, A., Bushman, F. D., & Collman, R. G. (2011) · American Journal of Respiratory and Critical Care Medicine

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 1,144

Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota

Albenberg, L., Esipova, T. V., Judge, C. P., Bittinger, K., Chen, J., Laughlin, A., Grunberg, S., Baldassano, R. N., Lewis, J. D., Li, H., et al. (2014) · Gastroenterology

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 886

Inflammation, antibiotics, and diet as environmental stressors of the gut microbiome in pediatric Crohn's disease

Lewis, J. D., Chen, E. Z., Baldassano, R. N., Otley, A. R., Griffiths, A. M., Lee, D., Bittinger, K., Bailey, A., Friedman, E. S., Hoffmann, C., et al. (2015) · Cell Host & Microbe

Gut microbiota and healthInflammatory Bowel Disease

Cited by 823

Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota

Lauder, A. P., Roche, A. M., Sherrill-Mix, S., Bailey, A., Laughlin, A. L., Bittinger, K., Leite, R., Elovitz, M. A., Parry, S., & Bushman, F. D. (2016) · Microbiome

Gut microbiota and healthReproductive tract infections research

Cited by 539

Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production

Wu, G. D., Compher, C., Chen, E. Z., Smith, S. A., Shah, R. D., Bittinger, K., Chehoud, C., Albenberg, L. G., Nessel, L., Gilroy, E., et al. (2016) · Gut

Gut microbiota and healthNutritional Studies and Diet

Cited by 512

Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers

Charlson, E. S., Chen, J., Custers-Allen, R., Bittinger, K., Li, H., Sinha, R., Hwang, J., Bushman, F. D., & Collman, R. G. (2010) · PLoS ONE

Oral microbiology and periodontitis researchGut microbiota and health

Cited by 437

Diabetes Enhances IL-17 Expression and Alters the Oral Microbiome to Increase Its Pathogenicity

Xiao, E., Mattos, M., Vieira, G. H. A., Chen, S., Corrêa, J. D., Wu, Y., Albiero, M. L., Bittinger, K., & Graves, D. T. (2017) · Cell Host & Microbe

Oral microbiology and periodontitis researchGut microbiota and health

Cited by 396

Lung-enriched Organisms and Aberrant Bacterial and Fungal Respiratory Microbiota after Lung Transplant

Charlson, E. S., Diamond, J. M., Bittinger, K., Fitzgerald, A. S., Yadav, A., Haas, A. R., Bushman, F. D., & Collman, R. G. (2012) · American Journal of Respiratory and Critical Care Medicine

Transplantation: Methods and OutcomesNosocomial Infections in ICU

Cited by 348

Gut microbiota modulate dendritic cell antigen presentation and radiotherapy-induced antitumor immune response

Uribe-Herranz, M., Rafail, S., Beghi, S., Gil-de-Gómez, L., Verginadis, I., Bittinger, K., Pustylnikov, S., Pierini, S., Perales-Linares, R., Blair, I. A., et al. (2019) · Journal of Clinical Investigation

Gut microbiota and healthCancer Immunotherapy and Biomarkers

Cited by 316

The gut microbiome regulates the increases in depressive-type behaviors and in inflammatory processes in the ventral hippocampus of stress vulnerable rats

Pearson-Leary, J., Zhao, C., Bittinger, K., Eacret, D., Luz, S., Vigderman, A. S., Dayanim, G., & Bhatnagar, S. (2020) · Molecular Psychiatry

Gut microbiota and healthTryptophan and brain disorders

Cited by 206

Viral Metagenomics Reveal Blooms of Anelloviruses in the Respiratory Tract of Lung Transplant Recipients

Young, J. C., Chehoud, C., Bittinger, K., Bailey, A., Diamond, J. M., Cantu, E., Haas, A. R., Abbas, A., Frye, L., Christie, J. D., et al. (2015) · American Journal of Transplantation

Respiratory viral infections researchTransplantation: Methods and Outcomes

Cited by 201

Gut microbiota modulates adoptive cell therapy via CD8α dendritic cells and IL-12

Uribe-Herranz, M., Bittinger, K., Rafail, S., Guedan, S., Pierini, S., Tanes, C., Ganetsky, A., Morgan, M. A., Gill, S., Tanyi, J. L., et al. (2018) · JCI Insight

Gut microbiota and healthImmunotherapy and Immune Responses

Cited by 175

FXR-dependent modulation of the human small intestinal microbiome by the bile acid derivative obeticholic acid

Friedman, E. S., Li, Y., Shen, T.-C. D., Jiang, J., Chau, L., Adorini, L., Babakhani, F., Edwards, J., Shapiro, D., Zhao, C., et al. (2018) · Gastroenterology

Gut microbiota and healthDrug Transport and Resistance Mechanisms

Cited by 149

A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples

Dollive, S., Peterfreund, G. L., Sherrill-Mix, S., Bittinger, K., Sinha, R., Hoffmann, C., Nabel, C. S., Hill, D. A., Artis, D., Bachman, M. A., et al. (2012) · Genome biology

Genomics and Phylogenetic StudiesEnvironmental DNA in Biodiversity Studies

Cited by 147