Lane, Lydie

A high-stringency blueprint of the human proteome

Adhikari, S., Nice, E. C., Deutsch, E. W., Lane, L., Omenn, G. S., Pennington, S. R., Paik, Y.-K., Overall, C. M., Corrales, F. J., Cristea, I. M., et al. (2020) · Nature Communications

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 210

The neXtProt knowledgebase on human proteins: 2017 update

Gaudet, P., Michel, P.-A., Zahn-Zabal, M., Britan, A., Cusin, I., Domagalski, M., Duek, P. D., Gateau, A., Gleizes, A., Hinard, V., et al. (2017) · Nucleic Acids Research

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 164

Protein function prediction as approximate semantic entailment

Kulmanov, M., Guzmán-Vega, F. J., Duek Roggli, P., Lane, L., Arold, S. T., & Hoehndorf, R. (2024) · Nature Machine Intelligence

Machine Learning in BioinformaticsBioinformatics and Genomic Networks

Cited by 131

DeepGO-SE: Protein function prediction as Approximate Semantic Entailment

Kulmanov, M., Guzmán-Vega, F., Duek, P., Lane, L., Arold, S., & Hoehndorf, R. (2023) · Nature Machine Intelligence

Machine Learning in BioinformaticsBioinformatics and Genomic Networks

Cited by 129

Metrics for the Human Proteome Project 2013–2014 and Strategies for Finding Missing Proteins

Lane, L., Bairoch, A., Beavis, R. C., Deutsch, E. W., Gaudet, P., Lundberg, E., & Omenn, G. S. (2014) · Journal of Proteome Research

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 129

neXtProt: Organizing Protein Knowledge in the Context of Human Proteome Projects

Gaudet, P., Argoud-Puy, G., Cusin, I., Duek, P., Evalet, O., Gateau, A., Gleizes, A., Pereira, M., Zahn-Zabal, M., Zwahlen, C., et al. (2013) · Journal of Proteome Research

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 124

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0

Deutsch, E. W., Lane, L., Overall, C. M., Bandeira, N., Baker, M. S., Pineau, C., Moritz, R. L., Corrales, F., Orchard, S., Van Eyk, J. E., et al. (2019) · Journal of Proteome Research

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 122

Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update

Vandenbrouck, Y., Lane, L., Carapito, C., Duek, P., Rondel, K., Bruley, C., Macron, C., Gonzalez de Peredo, A., Couté, Y., Chaoui, K., et al. (2016) · Journal of Proteome Research

Advanced Proteomics Techniques and ApplicationsSperm and Testicular Function

Cited by 77

The neXtProt peptide uniqueness checker: a tool for the proteomics community

Schaeffer, M., Gateau, A., Teixeira, D., Michel, P.-A., Zahn-Zabal, M., & Lane, L. (2017) · Bioinformatics

Advanced Proteomics Techniques and ApplicationsGenomics and Phylogenetic Studies

Cited by 70

Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project

Omenn, G. S., Lane, L., Overall, C. M., Corrales, F. J., Schwenk, J. M., Paik, Y.-K., Van Eyk, J. E., Liu, S., Pennington, S., Snyder, M. P., et al. (2019) · Journal of Proteome Research

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 40

Blinded Testing of Function Annotation for uPE1 Proteins by I-TASSER/COFACTOR Pipeline Using the 2018–2019 Additions to neXtProt and the CAFA3 Challenge

Zhang, C., Lane, L., Omenn, G. S., & Zhang, Y. (2019) · Journal of Proteome Research

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 22

Toward Completion of the Human Proteome Parts List: Progress Uncovering Proteins That Are Missing or Have Unknown Function and Developing Analytical Methods

Paik, Y.-K., Overall, C. M., Corrales, F., Deutsch, E. W., Lane, L., & Omenn, G. S. (2018) · Journal of Proteome Research

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 21

Missing Protein Landscape of Human Chromosomes 2 and 14: Progress and Current Status

Duek, P., Bairoch, A., Gateau, A., Vandenbrouck, Y., & Lane, L. (2016) · Journal of Proteome Research

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 17