Malbranke, Cyril

ProtMamba: a homology-aware but alignment-free protein state space model

Sgarbossa, D., Malbranke, C., & Bitbol, A.-F. (2025) · Bioinformatics

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 27

Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment

Malbranke, C., Rostain, W., Depardieu, F., Cocco, S., Monasson, R., & Bikard, D. (2023) · PLoS Computational Biology

Protein Structure and DynamicsCRISPR and Genetic Engineering

Cited by 15

Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment

Malbranke, C., Rostain, W., Depardieu, F., Cocco, S., Monasson, R., & Bikard, D. (2023) · PLOS Computational Biology

Protein Structure and DynamicsCRISPR and Genetic Engineering

Cited by 15

ProteomeLM: A proteome-scale language model enables accurate and rapid prediction of protein-protein interactions and gene essentiality across taxa

Malbranke, C., Zalaffi, G. P., & Bitbol, A.-F. (2025) · Proceedings of the National Academy of Sciences

Bioinformatics and Genomic NetworksMachine Learning in Bioinformatics

Cited by 2

Out-of-Equilibrium Selection Pressure Enhances Inference from Protein Sequence Data

Dietler, N., Malbranke, C., & Bitbol, A.-F. (2026) · Physical Review Letters

Protein Structure and DynamicsEvolution and Genetic Dynamics

Cited by 1