Marra, Marco A.

Comprehensive pan-genomic characterization of adrenocortical carcinoma

Zheng, S., Cherniack, A. D., Dewal, N., Moffitt, R. A., Danilova, L., Murray, B. A., Lerario, A. M., Else, T., Knijnenburg, T. A., Ciriello, G., et al. (2016) · Cancer Cell

Adrenal and Paraganglionic TumorsChromatin Remodeling and Cancer

Cited by 165

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

Wederell, E. D., Bilenky, M., Cullum, R., Thiessen, N., Dagpinar, M., Delaney, A., Varhol, R., Zhao, Y., Zeng, T., Bernier, B., et al. (2008) · Nucleic Acids Research

Genomics and Chromatin DynamicsLiver physiology and pathology

Cited by 150

Interaction of Cyclin-Dependent Kinase 12/CrkRS with Cyclin K1 Is Required for the Phosphorylation of the C-Terminal Domain of RNA Polymerase II

Cheng, S.-W. G., Kuzyk, M. A., Moradian, A., Ichu, T.-A., Chang, V. C.-D., Tien, J. F., Vollett, S. E., Griffith, M., Marra, M. A., & Morin, G. B. (2012) · Molecular and Cellular Biology

Genomics and Chromatin DynamicsRNA Research and Splicing

Cited by 124

Cryptococcus neoformans Gene Expression during Experimental Cryptococcal Meningitis

Steen, B. R., Zuyderduyn, S., Toffaletti, D. L., Marra, M., Jones, S. J. M., Perfect, J. R., & Kronstad, J. (2003) · Eukaryotic Cell

Fungal Infections and StudiesFungal and yeast genetics research

Cited by 123

A mouse atlas of gene expression: Large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells

Siddiqui, A. S., Khattra, J., Delaney, A. D., Zhao, Y., Astell, C., Asano, J., Babakaiff, R., Barber, S., Beland, J., Bohacec, S., et al. (2005) · Proceedings of the National Academy of Sciences

Genomics and Phylogenetic StudiesGene expression and cancer classification

Cited by 116

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

Hoffman, B. G., Robertson, G., Zavaglia, B., Beach, M., Cullum, R., Lee, S., Soukhatcheva, G., Li, L., Wederell, E. D., Thiessen, N., et al. (2010) · Genome Research

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 115

Hippo Signaling Influences HNF4A and FOXA2 Enhancer Switching during Hepatocyte Differentiation

Alder, O., Cullum, R., Lee, S., Kan, A. C., Wei, W., Yi, Y., Garside, V. C., Bilenky, M., Griffith, M., Morrissy, A. S., et al. (2014) · Cell Reports

Hippo pathway signaling and YAP/TAZGenomics and Chromatin Dynamics

Cited by 113

Application of a neural network whole transcriptome-based pan-cancer method for diagnosis of primary and metastatic cancers

Grewal, J. K., Tessier-Cloutier, B., Jones, M., Gakkhar, S., Ma, Y., Moore, R., Mungall, A. J., Zhao, Y., Taylor, M. D., Gelmon, K., et al. (2019) · JAMA Network Open

Cancer Diagnosis and TreatmentGene expression and cancer classification

Cited by 90

SOX9 modulates the expression of key transcription factors required for heart valve development

Garside, V. C., Cullum, R., Alder, O., Lu, D. Y., Vander Werff, R., Bilenky, M., Zhao, Y., Jones, S. J. M., Marra, M. A., Underhill, T. M., et al. (2015) · Development

Congenital heart defects researchDevelopmental Biology and Gene Regulation

Cited by 65

A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE)

Hou, J., Charters, A. M., Lee, S. C., Zhao, Y., Wu, M. K., Jones, S. J., Marra, M. A., & Hoodless, P. A. (2007) · BMC Developmental Biology

Developmental Biology and Gene RegulationPluripotent Stem Cells Research

Cited by 56

Poly‐gene fusion transcripts and chromothripsis in prostate cancer

Wu, C., Wyatt, A. W., McPherson, A., Lin, D., McConeghy, B. J., Mo, F., Shukin, R., Lapuk, A. V., M. Jones, S. J., Zhao, Y., et al. (2012) · Genes, Chromosomes and Cancer

Genomic variations and chromosomal abnormalitiesCancer Genomics and Diagnostics

Cited by 51

From cytogenetics to next-generation sequencing technologies: advances in the detection of genome rearrangements in tumorsThis paper is one of a selection of papers published in this Special Issue, entitled CSBMCB — Systems and Chemical Biology, and has undergone the Journal's usual peer review process.

Morozova, O., & Marra, M. A. (2008) · Biochemistry and Cell Biology

Genomic variations and chromosomal abnormalitiesGenome Rearrangement Algorithms

Cited by 46

Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines

Khattra, J., Delaney, A. D., Zhao, Y., Siddiqui, A., Asano, J., McDonald, H., Pandoh, P., Dhalla, N., Prabhu, A.-L., Ma, K., et al. (2007) · Genome Research

Genomics and Phylogenetic StudiesGene expression and cancer classification

Cited by 40

Genome-wide microRNA and messenger RNA profiling in rodent liver development implicates mir302b and mir20a in repressing transforming growth factor-beta signaling

Wei, W., Hou, J., Alder, O., Ye, X., Lee, S., Cullum, R., Chu, A., Zhao, Y., Warner, S. M., Knight, D. A., et al. (2013) · Hepatology

MicroRNA in disease regulationDevelopmental Biology and Gene Regulation

Cited by 19