Kondrashov, Fyodor A.

The ctenophore genome and the evolutionary origins of neural systems

Moroz, L. L., Kocot, K. M., Citarella, M. R., Dosung, S., Norekian, T. P., Povolotskaya, I. S., Grigorenko, A. P., Dailey, C., Berezikov, E., Buckley, K. M., et al. (2014) · Nature

Marine Invertebrate Physiology and EcologyDevelopmental Biology and Gene Regulation

Cited by 716

Local fitness landscape of the green fluorescent protein

Sarkisyan, K. S., Bolotin, D. A., Meer, M. V., Usmanova, D. R., Mishin, A. S., Sharonov, G. V., Ivankov, D. N., Bozhanova, N. G., Baranov, M. S., Soylemez, O., et al. (2016) · Nature

Evolution and Genetic DynamicsRNA and protein synthesis mechanisms

Cited by 591

Using AlphaFold to predict the impact of single mutations on protein stability and function

Pak, M. A., Markhieva, K. A., Novikova, M. S., Petrov, D. S., Vorobyev, I. S., Maksimova, E. S., Kondrashov, F. A., & Ivankov, D. N. (2021) · PLoS ONE

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 322

Using AlphaFold to predict the impact of single mutations on protein stability and function

Pak, M. A., Markhieva, K. A., Novikova, M. S., Petrov, D. S., Vorobyev, I. S., Maksimova, E. S., Kondrashov, F. A., & Ivankov, D. N. (2023) · PLOS One

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 322

A universal trend of amino acid gain and loss in protein evolution

Jordan, I. K., Kondrashov, F. A., Adzhubei, I. A., Wolf, Y. I., Koonin, E. V., Kondrashov, A. S., & Sunyaev, S. (2005) · Nature

RNA and protein synthesis mechanismsEvolution and Genetic Dynamics

Cited by 297

Role of selection in fixation of gene duplications

Kondrashov, F. A., & Kondrashov, A. S. (2006) · Journal of Theoretical Biology

Chromosomal and Genetic VariationsEvolution and Genetic Dynamics

Cited by 195

Complete Mitochondrial Genome and Phylogeny of Pleistocene MammothMammuthus primigenius

Rogaev, E. I., Moliaka, Y. K., Malyarchuk, B. A., Kondrashov, F. A., Derenko, M. V., Chumakov, I., & Grigorenko, A. P. (2006) · PLoS Biology

Evolution and Paleontology StudiesPleistocene-Era Hominins and Archaeology

Cited by 137

Distribution of the strength of selection against amino acid replacements in human proteins.

Yampolsky, L. Y., Kondrashov, F. A., & Kondrashov, A. S. (2005) · Human Molecular Genetics

Evolution and Genetic DynamicsGenomics and Rare Diseases

Cited by 95

Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation

Usmanova, D. R., Bogatyreva, N. S., Ariño Bernad, J., Eremina, A. A., Gorshkova, A. A., Kanevskiy, G. M., Lonishin, L. R., Meister, A. V., Yakupova, A. G., Kondrashov, F. A., et al. (2018) · Bioinformatics

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 93

Distinct features in fish Bouncer proteins determine sperm-egg compatibility

Gert, K. R. B., Panser, K., Surm, J., Steinmetz, B. S., Schleiffer, A., Moran, Y., Kondrashov, F., & Pauli, A. (2022) · Nature Communications

Reproductive biology and impacts on aquatic speciesDevelopmental Biology and Gene Regulation

Cited by 16

Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries

Gert, K. R. B., Panser, K., Surm, J., Steinmetz, B. S., Schleiffer, A., Jovine, L., Moran, Y., Kondrashov, F., & Pauli, A. (2023) · Nature Communications

Reproductive biology and impacts on aquatic speciesDevelopmental Biology and Gene Regulation

Cited by 15