Cox, Murray P.

SolexaQA: at-a-glance quality assessment of Illumina second-generation sequencing data

Cox, M. P., Peterson, D. A., & Biggs, P. J. (2010) · BMC Bioinformatics

Genomics and Phylogenetic StudiesFractal and DNA sequence analysis

Cited by 1,357

Dense sampling of bird diversity increases power of comparative genomics

Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Reeve, A. H., Xie, D., Chen, G., Guo, C., Faircloth, B. C., et al. (2020) · Nature

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 459

Genomic insights into the peopling of the Southwest Pacific

Skoglund, P., Posth, C., Sirak, K., Spriggs, M., Valentin, F., Bedford, S., Clark, G. R., Reepmeyer, C., Petchey, F., Fernandes, D., et al. (2016) · Nature

Forensic and Genetic ResearchPacific and Southeast Asian Studies

Cited by 414

Multiple Deeply Divergent Denisovan Ancestries in Papuans

Jacobs, G. S., Hudjashov, G., Saag, L., Kusuma, P., Darusallam, C. C., Lawson, D. J., Mondal, M., Pagani, L., Ricaut, F.-X., Stoneking, M., et al. (2019) · Cell

Pleistocene-Era Hominins and ArchaeologyForensic and Genetic Research

Cited by 346

Complex Patterns of Admixture across the Indonesian Archipelago

Hudjashov, G., Karafet, T. M., Lawson, D. J., Downey, S., Savina, O., Sudoyo, H., Lansing, J. S., Hammer, M. F., & Cox, M. P. (2017) · Molecular Biology and Evolution

Forensic and Genetic ResearchGenetic diversity and population structure

Cited by 191

Denisovan, modern human and mouse TNFAIP3 alleles tune A20 phosphorylation and immunity

Zammit, N. W., Siggs, O. M., Gray, P. E., Horikawa, K., Langley, D. B., Walters, S. N., Daley, S. R., Loetsch, C., Warren, J., Yap, J. Y., et al. (2019) · Nature Immunology

NF-κB Signaling PathwaysImmune Response and Inflammation

Cited by 80

Investigating the origins of eastern Polynesians using genome-wide data from the Leeward Society Isles

Hudjashov, G., Endicott, P., Post, H., Nagle, N., Ho, S. Y. W., Lawson, D. J., Reidla, M., Karmin, M., Rootsi, S., Metspalu, E., et al. (2018) · Scientific Reports

Pacific and Southeast Asian StudiesForensic and Genetic Research

Cited by 72

Insights into the Geobacillus stearothermophilus species based on phylogenomic principles

Burgess, S. A., Flint, S. H., Lindsay, D., Cox, M. P., & Biggs, P. J. (2017) · BMC Microbiology

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 62

The Venturia inaequalis effector repertoire is dominated by expanded families with predicted structural similarity, but unrelated sequence, to avirulence proteins from other plant-pathogenic fungi

Rocafort, M., Bowen, J. K., Hassing, B., Cox, M. P., McGreal, B., de la Rosa, S., Plummer, K. M., Bradshaw, R. E., & Mesarich, C. H. (2022) · BMC Biology

Plant Pathogens and Fungal DiseasesPlant Disease Resistance and Genetics

Cited by 52

Widespread Denisovan ancestry in Island Southeast Asia but no evidence of substantial super-archaic hominin admixture

Teixeira, J. C., Jacobs, G. S., Stringer, C., Tuke, J., Hudjashov, G., Purnomo, G. A., Sudoyo, H., Cox, M. P., Tobler, R., Turney, C. S. M., et al. (2021) · Nature Ecology & Evolution

Pleistocene-Era Hominins and ArchaeologyForensic and Genetic Research

Cited by 51

Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago

Natri, H. M., Bobowik, K. S., Kusuma, P., Crenna Darusallam, C., Jacobs, G. S., Hudjashov, G., Lansing, J. S., Sudoyo, H., Banovich, N. E., Cox, M. P., et al. (2020) · PLoS Genetics

Epigenetics and DNA MethylationForensic and Genetic Research

Cited by 48

Denisovan introgression has shaped the immune system of present-day Papuans

Vespasiani, D. M., Jacobs, G. S., Cook, L. E., Brucato, N., Leavesley, M., Kinipi, C., Ricaut, F.-X., Cox, M. P., & Gallego Romero, I. (2022) · PLOS Genetics

Pleistocene-Era Hominins and ArchaeologyForensic and Genetic Research

Cited by 46

Genetic architecture of gene regulation in Indonesian populations identifies QTLs associated with global and local ancestries

Natri, H. M., Hudjashov, G., Jacobs, G., Kusuma, P., Saag, L., Darusallam, C. C., Metspalu, M., Sudoyo, H., Cox, M. P., Gallego Romero, I., et al. (2022) · The American Journal of Human Genetics

Genetic Associations and EpidemiologyForensic and Genetic Research

Cited by 33

A single fungal strain was the unexpected cause of a mass aspergillosis outbreak in the world’s largest and only flightless parrot

Winter, D. J., Weir, B. S., Glare, T., Rhodes, J., Perrott, J., Fisher, M. C., Stajich, J. E., Digby, A., Dearden, P. K., & Cox, M. P. (2022) · iScience

Antifungal resistance and susceptibilityPlant Pathogens and Fungal Diseases

Cited by 21