Wolf, F. Alexander

SCANPY: large-scale single-cell gene expression data analysis

Wolf, F. A., Angerer, P., & Theis, F. J. (2018) · Genome Biology

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 8,881

Generalizing RNA velocity to transient cell states through dynamical modeling

Bergen, V., Lange, M., Peidli, S., Wolf, F. A., & Theis, F. J. (2020) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 2,951

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

Wolf, F. A., Hamey, F. K., Plass, M., Solana, J., Dahlin, J. S., Göttgens, B., Rajewsky, N., Simon, L., & Theis, F. J. (2019) · Genome Biology

Single-cell and spatial transcriptomicsTopological and Geometric Data Analysis

Cited by 1,698

Diffusion pseudotime robustly reconstructs lineage branching

Haghverdi, L., Büttner, M., Wolf, F. A., Buettner, F., & Theis, F. J. (2016) · Nature Methods

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 1,385

scGen predicts single-cell perturbation responses

Lotfollahi, M., Wolf, F. A., & Theis, F. J. (2019) · Nature Methods

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 661

A test metric for assessing single-cell RNA-seq batch correction

Büttner, M., Miao, Z., Wolf, F. A., Teichmann, S. A., & Theis, F. J. (2019) · Nature Methods

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 511

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics

Plass, M., Solana, J., Wolf, F. A., Ayoub, S., Misios, A., Glažar, P., Obermayer, B., Theis, F. J., Kocks, C., & Rajewsky, N. (2018) · Science

Single-cell and spatial transcriptomicsPlanarian Biology and Electrostimulation

Cited by 474

Predicting cellular responses to complex perturbations in high‐throughput screens

Lotfollahi, M., Klimovskaia Susmelj, A., De Donno, C., Hetzel, L., Ji, Y., Ibarra, I. L., Srivatsan, S. R., Naghipourfar, M., Daza, R. M., Martin, B., et al. (2023) · Molecular Systems Biology

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 307