Kundaje, Anshul

A genome-wide atlas of co-essential modules assigns function to uncharacterized genes

Wainberg, M., Kamber, R. A., Balsubramani, A., Meyers, R. M., Sinnott-Armstrong, N., Hornburg, D., Jiang, L., Chan, J., Jian, R., Gu, M., et al. (2021) · Nature Genetics

Bioinformatics and Genomic NetworksGene Regulatory Network Analysis

Cited by 204

A genome-wide almanac of co-essential modules assigns function to uncharacterized genes

Wainberg, M., Kamber, R. A., Balsubramani, A., Meyers, R. M., Sinnott-Armstrong, N., Hornburg, D., Jiang, L., Chan, J., Jian, R., Gu, M., et al. (2019) · Nature Genetics

Bioinformatics and Genomic NetworksGene Regulatory Network Analysis

Cited by 204

Characterization of the direct targets of FOXO transcription factors throughout evolution

Webb, A. E., Kundaje, A., & Brunet, A. (2016) · Aging Cell

FOXO transcription factor regulationGenetics, Aging, and Longevity in Model Organisms

Cited by 182

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

Kundaje, A., Kyriazopoulou-Panagiotopoulou, S., Libbrecht, M., Smith, C. L., Raha, D., Winters, E. E., Johnson, S. M., Snyder, M., Batzoglou, S., & Sidow, A. (2012) · Genome Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 178

Long-range single-molecule mapping of chromatin accessibility in eukaryotes

Shipony, Z., Marinov, G. K., Swaffer, M. P., Sinnott-Armstrong, N. A., Skotheim, J. M., Kundaje, A., & Greenleaf, W. J. (2020) · Nature Methods

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 160

An encyclopedia of enhancer-gene regulatory interactions in the human genome

Gschwind, A. R., Mualim, K. S., Karbalayghareh, A., Sheth, M. U., Dey, K. K., Jagoda, E., Nurtdinov, R. N., Xi, W., Tan, A. S., Jones, H., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory)

Genomics and Chromatin DynamicsGenetic Associations and Epidemiology

Cited by 119

White matter abnormalities and cognition in aging and Alzheimer disease

Peter, C., Sathe, A., Shashikumar, N., Pechman, K. R., Workmeister, A. W., Jackson, T. B., Huo, Y., Mukherjee, S., Mez, J., Dumitrescu, L. C., et al. (2025) · JAMA Neurology

Dementia and Cognitive Impairment ResearchAdvanced Neuroimaging Techniques and Applications

Cited by 59

Deciphering the impact of genetic variation on human polyadenylation using APARENT2

Linder, J., Koplik, S. E., Kundaje, A., & Seelig, G. (2022) · Genome Biology

RNA Research and SplicingGenetic Associations and Epidemiology

Cited by 49

Transfer learning reveals sequence determinants of the quantitative response to transcription factor dosage

Naqvi, S., Kim, S., Tabatabaee, S., Pampari, A., Kundaje, A., Pritchard, J. K., & Wysocka, J. (2025) · Cell Genomics

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 18