Linnarsson, Sten

Neuronal atlas of the dorsal horn defines its architecture and links sensory input to transcriptional cell types

Häring, M., Zeisel, A., Hochgerner, H., Rinwa, P., Jakobsson, J. E. T., Lönnerberg, P., La Manno, G., Sharma, N., Borgius, L., Kiehn, O., et al. (2018) · Nature Neuroscience

Single-cell and spatial transcriptomicsPain Mechanisms and Treatments

Cited by 470

Single-Cell Transcriptomics Reveals that Differentiation and Spatial Signatures Shape Epidermal and Hair Follicle Heterogeneity

Joost, S., Zeisel, A., Jacob, T., Sun, X., La Manno, G., Lönnerberg, P., Linnarsson, S., & Kasper, M. (2016) · Cell Systems

Single-cell and spatial transcriptomicsHair Growth and Disorders

Cited by 429

Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes

Fuzik, J., Zeisel, A., Máté, Z., Calvigioni, D., Yanagawa, Y., Szabó, G., Linnarsson, S., & Harkany, T. (2016) · Nature Biotechnology

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 386

The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing

Lein, E., Borm, L. E., & Linnarsson, S. (2017) · Science

Single-cell and spatial transcriptomicsCell Image Analysis Techniques

Cited by 383

Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics

Harris, K. D., Hochgerner, H., Skene, N. G., Magno, L., Katona, L., Bengtsson Gonzales, C., Somogyi, P., Kessaris, N., Linnarsson, S., & Hjerling-Leffler, J. (2018) · PLoS Biology

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 276

Highly multiplexed and strand-specific single-cell RNA 5′ end sequencing

Islam, S., Kjällquist, U., Moliner, A., Zajac, P., Fan, J.-B., Lönnerberg, P., & Linnarsson, S. (2012) · Nature Protocols

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 272

A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA

Lake, B. B., Codeluppi, S., Yung, Y. C., Gao, D., Chun, J., Kharchenko, P. V., Linnarsson, S., & Zhang, K. (2017) · Scientific Reports

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 271

Diversity of Interneurons in the Dorsal Striatum Revealed by Single-Cell RNA Sequencing and PatchSeq

Muñoz-Manchado, A. B., Bengtsson Gonzales, C., Zeisel, A., Munguba, H., Bekkouche, B., Skene, N. G., Lönnerberg, P., Ryge, J., Harris, K. D., Linnarsson, S., et al. (2018) · Cell Reports

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 229

Transcriptomic cytoarchitecture reveals principles of human neocortex organization

Jorstad, N. L., Close, J., Johansen, N., Yanny, A. M., Barkan, E. R., Travaglini, K. J., Bertagnolli, D., Campos, J., Casper, T., Crichton, K., et al. (2023) · Science

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 209

Comparative transcriptomics reveals human-specific cortical features

Jorstad, N. L., Song, J. H. T., Exposito-Alonso, D., Suresh, H., Castro-Pacheco, N., Krienen, F. M., Yanny, A. M., Close, J., Gelfand, E., Long, B., et al. (2023) · Science

Single-cell and spatial transcriptomicsNeurogenesis and neuroplasticity mechanisms

Cited by 208

A comparative atlas of single-cell chromatin accessibility in the human brain

Li, Y. E., Preissl, S., Miller, M., Johnson, N. D., Wang, Z., Jiao, H., Zhu, C., Wang, Z., Xie, Y., Poirion, O., et al. (2023) · Science

Genomics and Chromatin DynamicsSingle-cell and spatial transcriptomics

Cited by 173

Single-cell DNA methylation and 3D genome architecture in the human brain

Tian, W., Zhou, J., Bartlett, A., Zeng, Q., Liu, H., Castanon, R. G., Kenworthy, M., Altshul, J., Valadon, C., Aldridge, A., et al. (2023) · Science

Epigenetics and DNA MethylationSingle-cell and spatial transcriptomics

Cited by 154

Visceral motor neuron diversity delineates a cellular basis for nipple- and pilo-erection muscle control

Furlan, A., La Manno, G., Lübke, M., Häring, M., Abdo, H., Hochgerner, H., Kupari, J., Usoskin, D., Airaksinen, M. S., Oliver, G., et al. (2016) · Nature Neuroscience

Neurogenesis and neuroplasticity mechanismsDevelopmental Biology and Gene Regulation

Cited by 140

A secretagogin locus of the mammalian hypothalamus controls stress hormone release

Romanov, R. A., Alpár, A., Zhang, M., Zeisel, A., Calas, A., Landry, M., Fuszard, M., Shirran, S. L., Schnell, R., Dobolyi, Á., et al. (2015) · The EMBO Journal

Stress Responses and CortisolNeuropeptides and Animal Physiology

Cited by 85

Single-cell mRNA isoform diversity in the mouse brain

Karlsson, K., & Linnarsson, S. (2017) · BMC Genomics

RNA Research and SplicingSingle-cell and spatial transcriptomics

Cited by 76

Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals

Coleman, J. R. I., Bryois, J., Gaspar, H. A., Jansen, P. R., Savage, J. E., Skene, N., Plomin, R., Muñoz-Manchado, A. B., Linnarsson, S., Crawford, G., et al. (2019) · Molecular Psychiatry

Genetic Associations and EpidemiologyCognitive Abilities and Testing

Cited by 66

Alternative TSSs are co‐regulated in single cells in the mouse brain

Karlsson, K., Lönnerberg, P., & Linnarsson, S. (2017) · Molecular Systems Biology

Genomics and Chromatin DynamicsSingle-cell and spatial transcriptomics

Cited by 32