Moffitt, Jeffrey R.

Spatially resolved, highly multiplexed RNA profiling in single cells

Chen, K. H., Boettiger, A. N., Moffitt, J. R., Wang, S., & Zhuang, X. (2015) · Science

Single-cell and spatial transcriptomicsRNA Research and Splicing

Cited by 2,969

Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region

Moffitt, J. R., Bambah-Mukku, D., Eichhorn, S. W., Vaughn, E., Shekhar, K., Perez, J. D., Rubinstein, N. D., Hao, J., Regev, A., Dulac, C., et al. (2018) · Science

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 1,365

MAFG-driven astrocytes promote CNS inflammation

Wheeler, M. A., Clark, I. C., Tjon, E. C., Li, Z., Zandee, S. E. J., Couturier, C. P., Watson, B. R., Scalisi, G., Alkwai, S., Rothhammer, V., et al. (2020) · Nature

Multiple Sclerosis Research StudiesNeuroinflammation and Neurodegeneration Mechanisms

Cited by 501

The emerging landscape of spatial profiling technologies

Moffitt, J. R., Lundberg, E., & Heyn, H. (2022) · Nature Reviews Genetics

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 419

Cell segmentation in imaging-based spatial transcriptomics

Petukhov, V., Xu, R. J., Soldatov, R. A., Cadinu, P., Khodosevich, K., Moffitt, J. R., & Kharchenko, P. V. (2022) · Nature Biotechnology

Single-cell and spatial transcriptomicsCell Image Analysis Techniques

Cited by 412

High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing

Moffitt, J. R., Hao, J., Bambah-Mukku, D., Lu, T., Dulac, C., & Zhuang, X. (2016) · Proceedings of the National Academy of Sciences

Single-cell and spatial transcriptomicsAdvanced Fluorescence Microscopy Techniques

Cited by 308

Spatial transcriptomics of healthy and fibrotic human liver at single-cell resolution

Watson, B. R., Paul, B., Rahman, R. U., Amir-Zilberstein, L., Segerstolpe, Å., Epstein, E. T., Murphy, S., Geistlinger, L., Lee, T., Shih, A., et al. (2025) · Nature Communications

Single-cell and spatial transcriptomicsLiver physiology and pathology

Cited by 123

Exact Solutions for Kinetic Models of Macromolecular Dynamics

Chemla, Y. R., Moffitt, J. R., & Bustamante, C. (2008) · The Journal of Physical Chemistry B

stochastic dynamics and bifurcationAdvanced Fluorescence Microscopy Techniques

Cited by 93

Spatial transcriptomics reveals the distinct organization of mouse prefrontal cortex and neuronal subtypes regulating chronic pain

Bhattacherjee, A., Zhang, C., Watson, B. R., Djekidel, M. N., Moffitt, J. R., & Zhang, Y. (2023) · Nature Neuroscience

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 71

Methods in Statistical Kinetics

Moffitt, J. R., Chemla, Y. R., & Bustamante, C. (2010) · Methods in Enzymology

Advanced Fluorescence Microscopy TechniquesProtein Structure and Dynamics

Cited by 66