Nielsen, Rasmus

A metagenome-wide association study of gut microbiota in type 2 diabetes

Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., Liang, S., Zhang, W., Guan, Y., Shen, D., et al. (2012) · Nature

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 6,762

A draft sequence of the Neandertal genome

Green, R. E., Krause, J., Briggs, A. W., Maricic, T., Stenzel, U., Kircher, M., Patterson, N., Li, H., Zhai, W., Fritz, M. H.-Y., et al. (2010) · Science

Pleistocene-Era Hominins and ArchaeologyForensic and Genetic Research

Cited by 4,318

ANGSD: Analysis of Next Generation Sequencing Data

Korneliussen, T. S., Albrechtsen, A., & Nielsen, R. (2014) · BMC Bioinformatics

Genomics and Phylogenetic StudiesGenetic diversity and population structure

Cited by 2,982

Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology

Huelsenbeck, J. P., Ronquist, F., Nielsen, R., & Bollback, J. P. (2001) · Science

Genomics and Phylogenetic StudiesEvolution and Genetic Dynamics

Cited by 2,737

Codon-substitution models for heterogeneous selection pressure at amino acid sites

Yang, Z., Nielsen, R., Goldman, N., & Pedersen, A.-M. K. (2000) · Genetics

Evolution and Genetic DynamicsGenomics and Phylogenetic Studies

Cited by 2,286

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

Nielsen, R., & Yang, Z. (1998) · Genetics

Evolution and Genetic DynamicsGenomics and Phylogenetic Studies

Cited by 1,622

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

Yi, X., Liang, Y., Huerta-Sanchez, E., Jin, X., Cuo, Z. X. P., Pool, J. E., Xu, X., Jiang, H., Vinckenbosch, N., Korneliussen, T. S., et al. (2010) · Science

High Altitude and HypoxiaForensic and Genetic Research

Cited by 1,611

Population genomics of Bronze Age Eurasia

Allentoft, M. E., Sikora, M., Sjögren, K.-G., Rasmussen, S., Rasmussen, M., Stenderup, J., Damgaard, P. B., Schroeder, H., Ahlström, T., Vinner, L., et al. (2015) · Nature

Forensic and Genetic ResearchPleistocene-Era Hominins and Archaeology

Cited by 1,550

Evolutionary and biomedical insights from the rhesus macaque genome.

Gibbs, R. A., Rogers, J., Katze, M. G., Bumgarner, R., Weinstock, G. M., Mardis, E. R., Remington, K. A., Strausberg, R. L., Venter, J. C., Wilson, R. K., et al. (2007) · Science

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 1,403

Genotype and SNP calling from next-generation sequencing data

Nielsen, R., Paul, J. S., Albrechtsen, A., & Song, Y. S. (2011) · Nature Reviews Genetics

Genomics and Phylogenetic StudiesGenomics and Rare Diseases

Cited by 1,396

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

Yang, Z., & Nielsen, R. (2002) · Molecular Biology and Evolution

Evolution and Genetic DynamicsGenomics and Phylogenetic Studies

Cited by 1,374

The evolution of gene expression levels in mammalian organs

Brawand, D., Soumillon, M., Necsulea, A., Julien, P., Csárdi, G., Harrigan, P., Weier, M., Liechti, A., Aximu-Petri, A., Kircher, M., et al. (2011) · Nature

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 1,248

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

Huerta-Sánchez, E., Jin, X., Asan, Bianba, Z., Peter, B. M., Vinckenbosch, N., Liang, Y., Yi, X., He, M., Somel, M., et al. (2014) · Nature

High Altitude and HypoxiaForensic and Genetic Research

Cited by 1,208

The sequence and de novo assembly of the giant panda genome

Li, R., Fan, W., Tian, G., Zhu, H., He, L., Cai, J., Huang, Q., Cai, Q., Li, B., Bai, Y., et al. (2010) · Nature

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 1,180

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

Raghavan, M., Skoglund, P., Graf, K. E., Metspalu, M., Albrechtsen, A., Moltke, I., Rasmussen, S., Stafford Jr, T. W., Orlando, L., Metspalu, E., et al. (2014) · Nature

Forensic and Genetic ResearchPleistocene-Era Hominins and Archaeology

Cited by 963

The diploid genome sequence of an Asian individual

Wang, J., Wang, W., Li, R., Li, Y., Tian, G., Goodman, L., Fan, W., Zhang, J., Li, J., Zhang, J., et al. (2008) · Nature

Genomics and Phylogenetic StudiesForensic and Genetic Research

Cited by 924

Ancient human genome sequence of an extinct Palaeo-Eskimo

Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., et al. (2010) · Nature

Forensic and Genetic ResearchPleistocene-Era Hominins and Archaeology

Cited by 849

Recalibrating equus evolution using the genome sequence of an early middle pleistocene horse

Orlando, L., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., et al. (2013) · Nature

Genomics and Phylogenetic StudiesVeterinary Equine Medical Research

Cited by 841

An aboriginal Australian genome reveals separate human dispersals into Asia

Rasmussen, M., Guo, X., Wang, Y., Lohmueller, K. E., Rasmussen, S., Albrechtsen, A., Skotte, L., Lindgreen, S., Metspalu, M., Jombart, T., et al. (2011) · Science

Forensic and Genetic ResearchPleistocene-Era Hominins and Archaeology

Cited by 787

Tracing the peopling of the world through genomics

Nielsen, R., Akey, J. M., Jakobsson, M., Pritchard, J. K., Tishkoff, S., & Willerslev, E. (2017) · Nature

Forensic and Genetic ResearchPleistocene-Era Hominins and Archaeology

Cited by 728

A genomic history of Aboriginal Australia

Malaspinas, A.-S., Westaway, M. C., Muller, C., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., et al. (2016) · Nature

Forensic and Genetic ResearchAustralian Indigenous Culture and History

Cited by 650

Assessing the evolutionary impact of amino acid mutations in the human genome.

Boyko, A. R., Williamson, S. H., Indap, A. R., Degenhardt, J. D., Hernandez, R. D., Lohmueller, K. E., Adams, M. D., Schmidt, S., Sninsky, J. J., Sunyaev, S. R., et al. (2008) · PLoS Genetics

Evolution and Genetic DynamicsForensic and Genetic Research

Cited by 628

Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution

Fumagalli, M., Sironi, M., Pozzoli, U., Ferrer-Admettla, A., Pattini, L., & Nielsen, R. (2011) · PLoS Genetics

Forensic and Genetic ResearchEvolution and Genetic Dynamics

Cited by 600

Patterns of Positive Selection in Six Mammalian Genomes

Kosiol, C., Vinař, T., da Fonseca, R. R., Hubisz, M. J., Bustamante, C. D., Nielsen, R., & Siepel, A. (2008) · PLoS Genetics

Evolution and Genetic DynamicsGenomics and Phylogenetic Studies

Cited by 576