Terwilliger, Thomas C.

PHENIX : a comprehensive Python-based system for macromolecular structure solution

Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L.-W., Kapral, G. J., Grosse-Kunstleve, R. W., et al. (2010) · Acta Crystallographica Section D Biological Crystallography

Enzyme Structure and FunctionCrystal structures of chemical compounds

Cited by 23,716

Towards automated crystallographic structure refinement with phenix.refine

Afonine, P. V., Grosse-Kunstleve, R. W., Echols, N., Headd, J. J., Moriarty, N. W., Mustyakimov, M., Terwilliger, T. C., Urzhumtsev, A., Zwart, P. H., & Adams, P. D. (2012) · Acta Crystallographica Section D Biological Crystallography

Enzyme Structure and FunctionCrystal structures of chemical compounds

Cited by 5,511

PHENIX : building new software for automated crystallographic structure determination

Adams, P. D., Grosse-Kunstleve, R. W., Hung, L.-W., Ioerger, T. R., McCoy, A. J., Moriarty, N. W., Read, R. J., Sacchettini, J. C., Sauter, N. K., & Terwilliger, T. C. (2002) · Acta Crystallographica Section D Biological Crystallography

Enzyme Structure and FunctionCrystal structures of chemical compounds

Cited by 4,361

Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

Terwilliger, T. C., Grosse-Kunstleve, R. W., Afonine, P. V., Moriarty, N. W., Zwart, P. H., Hung, L.-W., Read, R. J., & Adams, P. D. (2008) · Acta Crystallographica Section D Biological Crystallography

Enzyme Structure and FunctionProtein Structure and Dynamics

Cited by 1,462

AlphaFold predictions are valuable hypotheses, and accelerate but do not replace experimental structure determination

Terwilliger, T. C., Liebschner, D., Croll, T. I., Williams, C. J., McCoy, A. J., Poon, B. K., Afonine, P. V., Oeffner, R. D., Richardson, J. S., Read, R. J., et al. (2022) · Nature Methods

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 411

AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination

Terwilliger, T. C., Liebschner, D., Croll, T. I., Williams, C. J., McCoy, A. J., Poon, B. K., Afonine, P. V., Oeffner, R. D., Richardson, J. S., Read, R. J., et al. (2024) · Nature Methods

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 411

Improved AlphaFold modeling with implicit experimental information

Terwilliger, T. C., Poon, B. K., Afonine, P. V., Schlicksup, C. J., Croll, T. I., Millán, C., Richardson, J. S., Read, R. J., & Adams, P. D. (2022) · Nature Methods

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 140

Improved AlphaFold modeling with implicit experimental information

Terwilliger, T. C., Poon, B. K., Afonine, P. V., Schlicksup, C. J., Croll, T. I., Millán, C., Richardson, J. S., Read, R. J., & Adams, P. D. (2022) · Nature Methods

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 140

Bottom-up structural proteomics: cryoEM of protein complexes enriched from the cellular milieu

Ho, C.-M., Li, X., Lai, M., Terwilliger, T. C., Beck, J. R., Wohlschlegel, J., Goldberg, D. E., Fitzpatrick, A. W. P., & Zhou, Z. H. (2020) · Nature Methods

Advanced Electron Microscopy Techniques and ApplicationsEnzyme Structure and Function

Cited by 115

Accelerating crystal structure determination with iterative AlphaFold prediction

Terwilliger, T. C., Afonine, P. V., Liebschner, D., Croll, T. I., McCoy, A. J., Oeffner, R. D., Williams, C. J., Poon, B. K., Richardson, J. S., Read, R. J., et al. (2023) · Acta Crystallographica Section D Structural Biology

Enzyme Structure and FunctionProtein Structure and Dynamics

Cited by 62

Likelihood-based docking of models into cryo-EM maps

Millán, C., McCoy, A. J., Terwilliger, T. C., & Read, R. J. (2023) · Acta Crystallographica Section D Structural Biology

Advanced Electron Microscopy Techniques and ApplicationsEnzyme Structure and Function

Cited by 23

Likelihood-based docking of models into cryo-EM maps

Millán, C., McCoy, A. J., Terwilliger, T. C., & Read, R. J. (2022) · Acta Crystallographica Section D Structural Biology

Advanced Electron Microscopy Techniques and ApplicationsEnzyme Structure and Function

Cited by 23

AlphaFold as a prior: experimental structure determination conditioned on a pretrained neural network

Fadini, A., Li, M., McCoy, A. J., Banjara, S., Okumura, H., Napier, E., Fontana, P., Khan, A. R., Jovine, L., Terwilliger, T. C., et al. (2026) · Nature Methods

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 22

Likelihood-based interactive local docking into cryo-EM maps in ChimeraX

Read, R. J., Pettersen, E. F., McCoy, A. J., Croll, T. I., Terwilliger, T. C., Poon, B. K., Meng, E. C., Liebschner, D., & Adams, P. D. (2024) · bioRxiv (Cold Spring Harbor Laboratory)

Advanced Electron Microscopy Techniques and ApplicationsEnzyme Structure and Function

Cited by 1