Bridge, Alan

UniProt: the Universal Protein Knowledgebase in 2023

The UniProt Consortium, Bateman, A., Martin, M.-J., Orchard, S., Magrane, M., Ahmad, S., Alpi, E., Bowler-Barnett, E. H., Britto, R., Bye-A-Jee, H., et al. (2023) · Nucleic Acids Research

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 7,210

UniProt: the universal protein knowledgebase in 2021

The UniProt Consortium, Bateman, A., Martin, M.-J., Orchard, S., Magrane, M., Agivetova, R., Ahmad, S., Alpi, E., Bowler-Barnett, E. H., Britto, R., et al. (2021) · Nucleic Acids Research

Genomics and Phylogenetic StudiesBiomedical Text Mining and Ontologies

Cited by 6,372

The Gene Ontology resource: enriching a GOld mine

The Gene Ontology Consortium, Carbon, S., Douglass, E., Good, B. M., Unni, D. R., Harris, N. L., Mungall, C. J., Basu, S., Chisholm, R. L., Dodson, R. J., et al. (2021) · Nucleic Acids Research

Biomedical Text Mining and OntologiesBioinformatics and Genomic Networks

Cited by 3,555

UniProt: the Universal Protein Knowledgebase in 2025

The UniProt Consortium, Bateman, A., Martin, M.-J., Orchard, S., Magrane, M., Adesina, A., Ahmad, S., Bowler-Barnett, E. H., Bye-A-Jee, H., Carpentier, D., et al. (2025) · Nucleic Acids Research

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 2,537

The InterPro protein families and domains database: 20 years on

Blum, M., Chang, H.-Y., Chuguransky, S., Grego, T., Kandasaamy, S., Mitchell, A., Nuka, G., Paysan-Lafosse, T., Qureshi, M., Raj, S., et al. (2021) · Nucleic Acids Research

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 2,231

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

Mitchell, A. L., Attwood, T. K., Babbitt, P. C., Blum, M., Bork, P., Bridge, A., Brown, S. D., Chang, H.-Y., El-Gebali, S., Fraser, M. I., et al. (2019) · Nucleic Acids Research

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 1,426

The IntAct molecular interaction database in 2010

Aranda, B., Achuthan, P., Alam-Faruque, Y., Armean, I., Bridge, A., Derow, C., Feuermann, M., Ghanbarian, A. T., Kerrien, S., Khadake, J., et al. (2010) · Nucleic Acids Research

Bioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies

Cited by 620

MetaNetX/MNXref–reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks

Moretti, S., Martin, O., Van Du Tran, T., Bridge, A., Morgat, A., & Pagni, M. (2016) · Nucleic Acids Research

Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic Networks

Cited by 162

Updates in Rhea—An expert curated resource of biochemical reactions

Morgat, A., Lombardot, T., Axelsen, K. B., Aimo, L., Niknejad, A., Hyka-Nouspikel, N., Coudert, E., Pozzato, M., Pagni, M., Moretti, S., et al. (2017) · Nucleic Acids Research

Bioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies

Cited by 65

Scaling up data curation using deep learning: An application to literature triage in genomic variation resources

Lee, K., Famiglietti, M. L., McMahon, A., Wei, C.-H., MacArthur, J. A. L., Poux, S., Breuza, L., Bridge, A., Cunningham, F., Xenarios, I., et al. (2018) · PLOS Computational Biology

Biomedical Text Mining and OntologiesInformation Retrieval and Search Behavior

Cited by 47

FAIR adoption, assessment and challenges at UniProt

Garcia, L., Bolleman, J., Gehant, S., Redaschi, N., Martin, M., UniProt Consortium, Bateman, A., Magrane, M., Martin, M., Orchard, S., et al. (2019) · Scientific Data

Research Data Management PracticesScientific Computing and Data Management

Cited by 20