Chen, Fei

Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution

Rodriques, S. G., Stickels, R. R., Goeva, A., Martin, C. A., Murray, E., Vanderburg, C. R., Welch, J., Chen, L. M., Chen, F., & Macosko, E. Z. (2019) · Science

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 2,424

Robust decomposition of cell type mixtures in spatial transcriptomics

Cable, D. M., Murray, E., Zou, L. S., Goeva, A., Macosko, E. Z., Chen, F., & Irizarry, R. A. (2022) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 1,487

Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2

Stickels, R. R., Murray, E., Kumar, P., Li, J., Marshall, J. L., Di Bella, D. J., Arlotta, P., Macosko, E. Z., & Chen, F. (2021) · Nature Biotechnology

Single-cell and spatial transcriptomicsRNA Research and Splicing

Cited by 1,295

Disease-associated astrocytes in Alzheimer’s disease and aging

Habib, N., McCabe, C., Medina, S., Varshavsky, M., Kitsberg, D., Dvir-Szternfeld, R., Green, G., Dionne, D., Nguyen, L., Marshall, J. L., et al. (2020) · Nature Neuroscience

Alzheimer's disease research and treatmentsNeuroinflammation and Neurodegeneration Mechanisms

Cited by 1,009

The expanding vistas of spatial transcriptomics

Tian, L., Chen, F., & Macosko, E. Z. (2023) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 539

Molecular logic of cellular diversification in the mouse cerebral cortex

Di Bella, D. J., Habibi, E., Stickels, R. R., Scalia, G., Brown, J., Yadollahpour, P., Yang, S. M., Abbate, C., Biancalani, T., Macosko, E. Z., et al. (2021) · Nature

Single-cell and spatial transcriptomicsNeurogenesis and neuroplasticity mechanisms

Cited by 464

Spatial genomics enables multi-modal study of clonal heterogeneity in tissues

Zhao, T., Chiang, Z. D., Morriss, J. W., LaFave, L. M., Murray, E. M., Del Priore, I., Meli, K., Lareau, C. A., Nadaf, N. M., Li, J., et al. (2022) · Nature

Single-cell and spatial transcriptomicsCancer Genomics and Diagnostics

Cited by 268

Slide-tags enables single-nucleus barcoding for multimodal spatial genomics

Russell, A. J. C., Weir, J. A., Nadaf, N. M., Shabet, M., Kumar, V., Kambhampati, S., Raichur, R., Marrero, G. J., Liu, S., Balderrama, K. S., et al. (2024) · Nature

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 225

Joint single-cell measurements of nuclear proteins and RNA in vivo

Chung, H., Parkhurst, C. N., Magee, E. M., Phillips, D., Habibi, E., Chen, F., Yeung, B. Z., Waldman, J., Artis, D., & Regev, A. (2021) · Nature Methods

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 144

ID1 Mediates Escape from TGFβ Tumor Suppression in Pancreatic Cancer

Huang, Y.-H., Hu, J., Chen, F., Lecomte, N., Basnet, H., David, C. J., Witkin, M. D., Allen, P. J., Leach, S. D., Hollmann, T. J., et al. (2020) · Cancer Discovery

TGF-β signaling in diseasesPancreatic and Hepatic Oncology Research

Cited by 78

Prediction of protein subcellular localization in single cells

Zhang, X., Tseo, Y., Bai, Y., Chen, F., & Uhler, C. (2024) · Nature Methods

Machine Learning in BioinformaticsCell Image Analysis Techniques

Cited by 25

Molecular Logic of Cellular Diversification in the Mammalian Cerebral Cortex

Di Bella, D. J., Habibi, E., Yang, S.-M., Stickels, R. R., Brown, J., Yadollahpour, P., Chen, F., Macosko, E. Z., Regev, A., & Arlotta, P. (2020) · bioRxiv (Cold Spring Harbor Laboratory)

Single-cell and spatial transcriptomicsNeurogenesis and neuroplasticity mechanisms

Cited by 20