McCoy, Airlie J.

PHENIX : a comprehensive Python-based system for macromolecular structure solution

Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L.-W., Kapral, G. J., Grosse-Kunstleve, R. W., et al. (2010) · Acta Crystallographica Section D Biological Crystallography

Enzyme Structure and FunctionCrystal structures of chemical compounds

Cited by 23,716

Phaser crystallographic software

McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., & Read, R. J. (2007) · Journal of Applied Crystallography

Enzyme Structure and FunctionCrystal structures of chemical compounds

Cited by 20,612

Overview of the CCP 4 suite and current developments

Winn, M. D., Ballard, C. C., Cowtan, K. D., Dodson, E. J., Emsley, P., Evans, P. R., Keegan, R. M., Krissinel, E. B., Leslie, A. G. W., McCoy, A., et al. (2011) · Acta Crystallographica Section D Biological Crystallography

Enzyme Structure and FunctionCrystal structures of chemical compounds

Cited by 12,353

PHENIX : building new software for automated crystallographic structure determination

Adams, P. D., Grosse-Kunstleve, R. W., Hung, L.-W., Ioerger, T. R., McCoy, A. J., Moriarty, N. W., Read, R. J., Sacchettini, J. C., Sauter, N. K., & Terwilliger, T. C. (2002) · Acta Crystallographica Section D Biological Crystallography

Enzyme Structure and FunctionCrystal structures of chemical compounds

Cited by 4,361

Molecular Architecture and Functional Model of the Endocytic AP2 Complex

Collins, B. M., McCoy, A. J., Kent, H. M., Evans, P. R., & Owen, D. J. (2002) · Cell

Cellular transport and secretionReceptor Mechanisms and Signaling

Cited by 648

AlphaFold predictions are valuable hypotheses, and accelerate but do not replace experimental structure determination

Terwilliger, T. C., Liebschner, D., Croll, T. I., Williams, C. J., McCoy, A. J., Poon, B. K., Afonine, P. V., Oeffner, R. D., Richardson, J. S., Read, R. J., et al. (2022) · Nature Methods

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 411

AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination

Terwilliger, T. C., Liebschner, D., Croll, T. I., Williams, C. J., McCoy, A. J., Poon, B. K., Afonine, P. V., Oeffner, R. D., Richardson, J. S., Read, R. J., et al. (2024) · Nature Methods

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 411

Transient Fcho1/2⋅Eps15/R⋅AP-2 Nanoclusters Prime the AP-2 Clathrin Adaptor for Cargo Binding

Ma, L., Umasankar, P. K., Wrobel, A. G., Lymar, A., McCoy, A. J., Holkar, S. S., Jha, A., Pradhan-Sundd, T., Watkins, S. C., Owen, D. J., et al. (2016) · Developmental Cell

Cellular transport and secretionBiotin and Related Studies

Cited by 115

Implications of AlphaFold 2 for crystallographic phasing by molecular replacement

McCoy, A. J., Sammito, M. D., & Read, R. J. (2022) · Acta Crystallographica Section D Structural Biology

Enzyme Structure and FunctionProtein Structure and Dynamics

Cited by 104

Accelerating crystal structure determination with iterative AlphaFold prediction

Terwilliger, T. C., Afonine, P. V., Liebschner, D., Croll, T. I., McCoy, A. J., Oeffner, R. D., Williams, C. J., Poon, B. K., Richardson, J. S., Read, R. J., et al. (2023) · Acta Crystallographica Section D Structural Biology

Enzyme Structure and FunctionProtein Structure and Dynamics

Cited by 62

Assessing the utility of CASP14 models for molecular replacement

Millán, C., Keegan, R. M., Pereira, J., Sammito, M. D., Simpkin, A. J., McCoy, A. J., Lupas, A. N., Hartmann, M. D., Rigden, D. J., & Read, R. J. (2021) · Proteins: Structure, Function, and Bioinformatics

Enzyme Structure and FunctionProtein Structure and Dynamics

Cited by 62

Likelihood-based docking of models into cryo-EM maps

Millán, C., McCoy, A. J., Terwilliger, T. C., & Read, R. J. (2023) · Acta Crystallographica Section D Structural Biology

Advanced Electron Microscopy Techniques and ApplicationsEnzyme Structure and Function

Cited by 23

Likelihood-based docking of models into cryo-EM maps

Millán, C., McCoy, A. J., Terwilliger, T. C., & Read, R. J. (2022) · Acta Crystallographica Section D Structural Biology

Advanced Electron Microscopy Techniques and ApplicationsEnzyme Structure and Function

Cited by 23

AlphaFold as a prior: experimental structure determination conditioned on a pretrained neural network

Fadini, A., Li, M., McCoy, A. J., Banjara, S., Okumura, H., Napier, E., Fontana, P., Khan, A. R., Jovine, L., Terwilliger, T. C., et al. (2026) · Nature Methods

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 22

Likelihood-based interactive local docking into cryo-EM maps in ChimeraX

Read, R. J., Pettersen, E. F., McCoy, A. J., Croll, T. I., Terwilliger, T. C., Poon, B. K., Meng, E. C., Liebschner, D., & Adams, P. D. (2024) · bioRxiv (Cold Spring Harbor Laboratory)

Advanced Electron Microscopy Techniques and ApplicationsEnzyme Structure and Function

Cited by 1