Ofran, Yanay

The structural basis of antibody–antigen recognition

Sela-Culang, I., Kunik, V., & Ofran, Y. (2013) · Frontiers in Immunology

Monoclonal and Polyclonal Antibodies Researchvaccines and immunoinformatics approaches

Cited by 530

Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools

Greenbaum, J. A., Andersen, P. H., Blythe, M., Bui, H., Cachau, R. E., Crowe, J., Davies, M., Kolaskar, A. S., Lund, O., Morrison, S., et al. (2007) · Journal of Molecular Recognition

vaccines and immunoinformatics approachesMachine Learning in Bioinformatics

Cited by 244

How far from the SNP may the causative genes be?

Brodie, A., Azaria, J. R., & Ofran, Y. (2016) · Nucleic Acids Research

Genetic Associations and EpidemiologyBioinformatics and Genomic Networks

Cited by 172

Paratome: an online tool for systematic identification of antigen-binding regions in antibodies based on sequence or structure

Kunik, V., Ashkenazi, S., & Ofran, Y. (2012) · Nucleic Acids Research

Monoclonal and Polyclonal Antibodies Researchvaccines and immunoinformatics approaches

Cited by 132

Structural consensus among antibodies defines the antigen binding site

Kunik, V., Peters, B., & Ofran, Y. (2012) · PLoS Computational Biology

Monoclonal and Polyclonal Antibodies Researchvaccines and immunoinformatics approaches

Cited by 117

The indistinguishability of epitopes from protein surface is explained by the distinct binding preferences of each of the six antigen-binding loops

Kunik, V., & Ofran, Y. (2013) · Protein Engineering Design and Selection

vaccines and immunoinformatics approachesMonoclonal and Polyclonal Antibodies Research

Cited by 96

Computational design of epitope-specific functional antibodies

Nimrod, G., Fischman, S., Austin, M., Herman, A., Keyes, F., Leiderman, O., Hargreaves, D., Strajbl, M., Breed, J., Klompus, S., et al. (2018) · Cell Reports

Protein Structure and DynamicsMonoclonal and Polyclonal Antibodies Research

Cited by 77

Using a combined computational-experimental approach to predict antibody-specific B cell epitopes

Sela-Culang, I., Benhnia, M. R.-E.-I., Matho, M. H., Kaever, T., Maybeno, M., Schlossman, A., Nimrod, G., Li, S., Xiang, Y., Zajonc, D., et al. (2014) · Structure

vaccines and immunoinformatics approachesMonoclonal and Polyclonal Antibodies Research

Cited by 69

DistilProtBert: a distilled protein language model used to distinguish between real proteins and their randomly shuffled counterparts

Geffen, Y., Ofran, Y., & Unger, R. (2022) · Bioinformatics

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 40

DistilProtBert: A distilled protein language model used to distinguish between real proteins and their randomly shuffled counterparts

Geffen, Y., Ofran, Y., & Unger, R. (2022) · Bioinformatics

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 40