Dubchak, Inna

MycoCosm portal: gearing up for 1000 fungal genomes

Grigoriev, I. V., Nikitin, R., Haridas, S., Kuo, A., Ohm, R., Otillar, R., Riley, R., Salamov, A., Zhao, X., Korzeniewski, F., et al. (2014) · Nucleic Acids Research

Genomics and Phylogenetic StudiesFungal and yeast genetics research

Cited by 1,498

In vivo enhancer analysis of human conserved non-coding sequences

Pennacchio, L. A., Ahituv, N., Moses, A. M., Prabhakar, S., Nobrega, M. A., Shoukry, M., Minovitsky, S., Dubchak, I., Holt, A., Lewis, K. D., et al. (2006) · Nature

Genomics and Chromatin DynamicsDevelopmental Biology and Gene Regulation

Cited by 1,165

VISTA Enhancer Browser—a database of tissue-specific human enhancers

Visel, A., Minovitsky, S., Dubchak, I., & Pennacchio, L. A. (2007) · Nucleic Acids Research

Genomics and Chromatin DynamicsDevelopmental Biology and Gene Regulation

Cited by 1,080

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

Palenik, B., Grimwood, J., Aerts, A., Rouzé, P., Salamov, A., Putnam, N., Dupont, C., Jorgensen, R., Derelle, E., Rombauts, S., et al. (2007) · Proceedings of the National Academy of Sciences

Protist diversity and phylogenyChromosomal and Genetic Variations

Cited by 625

RegPrecise 3.0–a resource for genome-scale exploration of transcriptional regulation in bacteria

Novichkov, P. S., Kazakov, A. E., Ravcheev, D. A., Leyn, S. A., Kovaleva, G. Y., Sutormin, R. A., Kazanov, M. D., Riehl, W., Arkin, A. P., Dubchak, I., et al. (2013) · BMC Genomics

Bacterial Genetics and BiotechnologyGene Regulatory Network Analysis

Cited by 451

Combinatorial Regulation of Endothelial Gene Expression by Ets and Forkhead Transcription Factors

De Val, S., Chi, N. C., Meadows, S. M., Minovitsky, S., Anderson, J. P., Harris, I. S., Ehlers, M. L., Agarwal, P., Visel, A., Xu, S.-M., et al. (2008) · Cell

Developmental Biology and Gene RegulationGenomics and Chromatin Dynamics

Cited by 343

Strategies and tools for whole-genome alignments

Couronne, O., Poliakov, A., Bray, N., Ishkhanov, T., Ryaboy, D., Rubin, E., Pachter, L., & Dubchak, I. (2003) · Genome Research

Genomics and Phylogenetic StudiesGenome Rearrangement Algorithms

Cited by 224

Characterization of Evolutionary Rates and Constraints in Three Mammalian Genomes

Cooper, G. M., Brudno, M., Stone, E. A., Dubchak, I., Batzoglou, S., & Sidow, A. (2004) · Genome Research

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 134

Alignathon: a competitive assessment of whole-genome alignment methods

Earl, D., Nguyen, N., Hickey, G., Harris, R. S., Fitzgerald, S., Beal, K., Seledtsov, I., Molodtsov, V., Raney, B. J., Clawson, H., et al. (2014) · Genome Research

Genomics and Phylogenetic StudiesGenome Rearrangement Algorithms

Cited by 113

Functionally conserved enhancers with divergent sequences in distant vertebrates

Yang, S., Oksenberg, N., Takayama, S., Heo, S.-J., Poliakov, A., Ahituv, N., Dubchak, I., & Boffelli, D. (2015) · BMC Genomics

Genomics and Chromatin DynamicsChromosomal and Genetic Variations

Cited by 27