Mueller, Nikola S.

Single-cell RNA-seq denoising using a deep count autoencoder

Eraslan, G., Simon, L. M., Mircea, M., Mueller, N. S., & Theis, F. J. (2019) · Nature Communications

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 1,084

Exome sequencing of osteosarcoma reveals mutation signatures reminiscent of BRCA deficiency

Kovac, M., Blattmann, C., Ribi, S., Smida, J., Mueller, N. S., Engert, F., Castro-Giner, F., Weischenfeldt, J., Kovacova, M., Krieg, A., et al. (2015) · Nature Communications

Sarcoma Diagnosis and TreatmentCancer Genomics and Diagnostics

Cited by 353

Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data

Ocone, A., Haghverdi, L., Mueller, N. S., & Theis, F. J. (2015) · Bioinformatics

Gene Regulatory Network AnalysisSingle-cell and spatial transcriptomics

Cited by 155

Model Based Targeting of IL-6-Induced Inflammatory Responses in Cultured Primary Hepatocytes to Improve Application of the JAK Inhibitor Ruxolitinib

Sobotta, S., Raue, A., Huang, X., Vanlier, J., Jünger, A., Bohl, S., Albrecht, U., Hahnel, M. J., Wolf, S., Mueller, N. S., et al. (2017) · Frontiers in Physiology

Cytokine Signaling Pathways and InteractionsGene Regulatory Network Analysis

Cited by 28

BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Uzbas, F., Opperer, F., Sönmezer, C., Shaposhnikov, D., Sass, S., Krendl, C., Angerer, P., Theis, F. J., Mueller, N. S., & Drukker, M. (2019) · Genome Biology

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 23