Exome sequencing of osteosarcoma reveals mutation signatures reminiscent of BRCA deficiency
Open accessAbstract
Osteosarcomas are aggressive bone tumours with a high degree of genetic heterogeneity, which has historically complicated driver gene discovery. Here we sequence exomes of 31 tumours and decipher their evolutionary landscape by inferring clonality of the individual mutation events. Exome findings are interpreted in the context of mutation and SNP array data from a replication set of 92 tumours. We identify 14 genes as the main drivers, of which some were formerly unknown in the context of osteosarcoma. None of the drivers is clearly responsible for the majority of tumours and even TP53 mutations are frequently mapped into subclones. However, >80% of osteosarcomas exhibit a specific combination of single-base substitutions, LOH, or large-scale genome instability signatures characteristic of BRCA1/2-deficient tumours. Our findings imply that multiple oncogenic pathways drive chromosomal instability during osteosarcoma evolution and result in the acquisition of BRCA-like traits, which could be therapeutically exploited.
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Osteosarcoma development can be described by the conjunction of oncogenic events initiating malignant transformation, progressive increase of genetic aberrations with increasing proliferation of cells committed to the osteoblast lineage during bone growth, and involvement of a permissive microenvironment that is a prerequisite for cancer cell growth.
“Osteosarcoma development can be described by the conjunction of multiple factors: oncogenic events that initiate malignant transformation, a progressive increase of genetic aberrations with the increasing proliferation rate of cells committed towards the osteoblast lineage during bone growth 44 , and involvement of a permissive microenvironment, which is a prerequisite for the growth of cancer”
From Osteosarcoma (2022) · cites this paper as [44]
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- Authors
- Kovac, M., Blattmann, C., Ribi, S., Smida, J., Mueller, N. S., Engert, F., Castro-Giner, F., Weischenfeldt, J., Kovacova, M., Krieg, A., Andreou, D., Tunn, P.-U., Dürr, H. R., Rechl, H., Schaser, K.-D., Melcher, I., Burdach, S., Kulozik, A., Specht, K., Heinimann, K., Fulda, S., Bielack, S., Jundt, G., Tomlinson, I., Korbel, J. O., Nathrath, M., & Baumhoer, D.
- Affiliations
- Centre for Human Genetics (GB)
- Heidelberg University (DE)
- University Hospital of Basel (CH)
- TUM Klinikum (DE)
- Helmholtz Munich (DE)
- Goethe University Frankfurt (DE)
- European Molecular Biology Laboratory (DE)
- University Children’s Hospital Basel (CH)
- Helios Hospital Berlin-Buch (DE)
- Ludwig-Maximilians-Universität München (DE)
- University Hospital Carl Gustav Carus (DE)
- Charité – Universitätsmedizin Berlin (DE)
- Technical University of Munich (DE)
- Olgahospital (DE)
- Corresponding author
- Baumhoer, Daniel
- ORCID
- Kovac, Michal
- Blattmann, Claudia
- Ribi, Sebastian
- Smida, Jan
- Castro-Giner, Francesc
- Weischenfeldt, Joachim
- Krieg, Andreas
- Andreou, Dimosthenis
- Tunn, Per-Ulf
- Dürr, Hans Roland
- Rechl, Hans
- Schaser, Klaus-Dieter
- Burdach, Stefan
- Kulozik, Andreas
- Specht, Katja
- Heinimann, Karl
- Fulda, Simone
- Bielack, Stefan
- Jundt, Gernot
- Tomlinson, Ian
- Korbel, Jan O.
- Nathrath, Michaela
- Baumhoer, Daniel
- Venue
- Nature Communications
- Published
- 2015-12-03
- Volume
- 6
- Issue
- 1
- Pages
- 8940-8940
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC4686819
- OpenAlex
- W2262236353
- Cited by
- 353
- References
- 39
- Citations by year
- 2026: 19 · 2025: 26 · 2024: 25 · 2023: 38 · 2022: 32 · 2021: 52 · 2020: 52 · 2019: 38 · 2018: 24 · 2017: 22 · 2016: 21 · 2015: 1 · 2014: 2
- FWCI
- 17.90
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Nature Communications (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- PuSH - Publication Server of Helmholtz Zentrum München (submittedVersion, cc-by-nc-nd)
- RePEc: Research Papers in Economics (submittedVersion)
- Open access LMU (Ludwid Maxmilian's Universitat Munchen) (submittedVersion)
- mediaTUM (Technical University of Munich) (submittedVersion)
- Site cant be reached (submittedVersion, cc-by-nc-nd)
- Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt) (submittedVersion, cc-by)
- Funders
- Universität Basel
- Cancer Research UK (16459)
- European Commission (261474, 2007–2013, FP7 2007-2013, FP7/2007)
- Bundesministerium für Bildung und Forschung (01GM0870, FKZ 01GM0870)
- Topics
- Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Sarcoma Diagnosis and Treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer Genomics and Diagnostics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chromatin Remodeling and Cancer
- Keywords
- osteosarcoma, driver genes, clonal evolution, subclonal mutations, TP53 mutation, BRCA1/2 deficiency, loss of heterozygosity, single base substitution, chromosomal instability, tumor heterogeneity, therapeutic target
- MeSH terms
- Poly(ADP-ribose) Polymerase Inhibitors, Bone Neoplasms, Humans, Mutation, Phthalazines, Osteosarcoma, Gene Expression Regulation, Neoplastic, Cell Line, Tumor, Exome
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