The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
Next Generation Sequence Assembly with AMOS
Open accessAbstract
A Modular Open‐Source Assembler (AMOS) was designed to offer a modular approach to genome assembly. AMOS includes a wide range of tools for assembly, including the lightweight de novo assemblers Minimus and Minimo, and Bambus 2, a robust scaffolder able to handle metagenomic and polymorphic data. This protocol describes how to configure and use AMOS for the assembly of Next Generation sequence data. Additionally, we provide three tutorial examples that include bacterial, viral, and metagenomic datasets with specific tips for improving assembly quality.Curr. Protoc. Bioinform. 33:11.8.1‐11.8.18. © 2011 by John Wiley & Sons, Inc.
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A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase
Sanger, F., & Coulson, A. R. (1975) · Journal of Molecular Biology · doi:10.1016/0022-2836(75)90213-2 · Cited by 2,709
Dalloul, R. A., Long, J. A., Zimin, A. V., Aslam, L., Beal, K., Ann Blomberg, L., Bouffard, P., Burt, D. W., Crasta, O., Crooijmans, R. P. M. A., et al. (2010) · PLoS Biology · doi:10.1371/journal.pbio.1000475 · Cited by 416
Cited by
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
Chin, C.-S., Alexander, D. H., Marks, P., Klammer, A. A., Drake, J., Heiner, C., Clum, A., Copeland, A., Huddleston, J., Eichler, E. E., et al. (2013) · Nature Methods · doi:10.1038/nmeth.2474 · Cited by 4,029
MetaHIT Consortium, Nielsen, H. B., Almeida, M., Juncker, A. S., Rasmussen, S., Li, J., Sunagawa, S., Plichta, D. R., Gautier, L., Pedersen, A. G., et al. (2014) · Nature Biotechnology · doi:10.1038/nbt.2939 · Cited by 1,184
Naccache, S. N., Federman, S., Veeraraghavan, N., Zaharia, M., Lee, D., Samayoa, E., Bouquet, J., Greninger, A. L., Luk, K.-C., Enge, B., et al. (2014) · Genome Research · doi:10.1101/gr.171934.113 · Cited by 460
Assembly of long error-prone reads using de Bruijn graphs
Lin, Y., Yuan, J., Kolmogorov, M., Shen, M. W., Chaisson, M., & Pevzner, P. A. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1604560113 · Cited by 382
Ye, C., Hill, C. M., Wu, S., Ruan, J., & Ma, Z. (2016) · Scientific Reports · doi:10.1038/srep31900 · Cited by 304
Metadata
- Authors
- Treangen, T. J., Sommer, D. D., Angly, F. E., Koren, S., & Pop, M.
- Venue
- Current Protocols in Bioinformatics
- Publisher
- Wiley
- Published
- 2011-03
- Volume
- 33
- Issue
- 1
- Pages
- Unit 11.8-Unit 11.8
- ISSN
- 1934-3396 (ISSN-L)
- 1934-340X
- OpenAlex
- W1550594300
- Cited by
- 212
- References
- 2
- FWCI
- 4.35
- Type
- journal article
- Language
- en
- Open access
- green
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