Generation of no‐yellow‐pigment Xenopus tropicalis by slc2a7 gene knockout
Open accessAbstract
Background: Amphibians possess three kinds of dermal chromatophore: melanophores, iridophores, and xanthophores. Knockout Xenopus tropicalis that lack the pigmentation of melanophores and iridophores have been reported. The identification of the causal genes for xanthophore pigmentation or differentiation could lead to the creation of a see‐through frog without three chromatophores. The genes causing xanthophore differentiation mutants are slc2a11b and slc2a15b in Japanese medaka (Oryzias latipes). Results: To obtain a heritable line of X tropicalis mutants without yellow pigment, we generated slc2a7 and slc2a15a knockout animals because they have the greatest similarity to the O latipes slc2a11b and slc2a15b genes. The slc2a7 knockout frog had a bluish skin and there were no visible yellow pigments in stereo microscope and skin section observations. Furthermore, no pterinosomes, which are characteristic of xanthophores, were observed via transmission electron microscopy in the skin of knockout animals. Conclusions: We report the successful generation of a heritable no‐yellow‐pigment X tropicalis mutant after knock out of the slc2a7 gene. This finding will enable the creation of a see‐through frog with no chromatophores.
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Transparent tetrapod models are basically unpigmented mutants that are not transparent.
“Furthermore, transparent tetrapod models are basically unpigmented mutants that are not transparent [e.g., (30–32)].”
From Glassfrogs conceal blood in their liver to maintain transparency (2022) · cites this paper as [30]
The Results and Discussion describe this paper’s slc2a7-knockout frog as lacking yellow pigment; they present a see-through frog as a future goal, supporting this mutant as an example of a pigmentation mutant that is not yet transparent. But the Introduction also describes genuinely transparent frogs and virtually transparent mutant embryos, so the paper does not support the categorical claim that transparent tetrapod models are not transparent. The indexed passages provide section labels but no page numbers. (LLM, conf=0.85)
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The glucose transporter families SGLT and GLUT: molecular basis of normal and aberrant function
Scheepers, A., Joost, H., & Schurmann, A. (2004) · Journal of Parenteral and Enteral Nutrition · doi:10.1177/0148607104028005364 · Cited by 476 · cited 1× · see citing works
“Both genes code class II sugar transport facilitators, which belong to the membrane transporter superfamily.(22,23) Although the substrates for Slc2a11b and Slc2a15b remain unknown and which step is participated by those genes to form xanthophore is now unresolved, the homologs of those genes in X tropicalis would inv…”
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Research works printed but not linked: 42
- Bagnara JT, Taylor JD, Hadley ME. The dermal chromatophore unit. J Cell Biol. 1968;38(1):67-79. https://doi.org/10.1083/jcb. 38.1.67. · DOI
- Sumida M, Islam MM, Igawa T, et al. The first see-through frog created by breeding: description, inheritance patterns, and der- mal chromatophore structure. Sci Rep. 2016;6:24431. https:// doi.org/10.1038/srep24431. · DOI · Paper page
- Kashiwagi K, Kashiwagi A, Kurabayashi A, et al. Xenopus tropicalis: an ideal experimental animal in amphibia. Exp Anim. 2010;59(4):395-405.
- Karimi K, Fortriede JD, Lotay VS, et al. Xenbase: a genomic, epigenomic and transcriptomic model organism database. Nucleic Acids Res. 2018;46(D1):D861-D868. https://doi.org/10. 1093/nar/gkx936. · DOI
- Horb M, Wlizla M, Abu-Daya A, et al. Xenopus resources: transgenic, inbred and mutant animals, training opportunities, and web-based support. Front Physiol. 2019;10:387. https://doi. org/10.3389/fphys.2019.00387. · DOI
- Nakajima K, Nakajima T, Takase M, Yaoita Y. Generation of albino Xenopus tropicalis using zinc-finger nucleases. Dev Growth Differ. 2012;54(9):777-784. https://doi.org/10.1111/dgd.12006. · DOI
- Ishibashi S, Cliffe R, Amaya E. Highly efficient bi-allelic muta- tion rates using TALENs in Xenopus tropicalis. Biol Open. 2012; 1(12):1273-1276. https://doi.org/10.1242/bio.20123228. · DOI
- Nakajima K, Nakai Y, Okada M, Yaoita Y. Targeted gene dis- ruption in the Xenopus tropicalis genome using designed TALE nucleases. Zool Sci. 2013;30(6):455-460. https://doi.org/10.2108/ zsj.30.455. · DOI
- Blitz IL, Biesinger J, Xie X, Cho KW. Biallelic genome modifi- cation in F0 Xenopus tropicalis embryos using the CRISPR/Cas system. Genesis. 2013;51(12):827-834. https://doi.org/10.1002/ dvg.22719. · DOI
- Nakayama T, Fish MB, Fisher M, Oomen-Hajagos J, Thomsen GH, Grainger RM. Simple and efficient CRISPR/Cas9-mediated targeted mutagenesis in Xenopus tropicalis. Genesis. 2013;51(12): 835-843. https://doi.org/10.1002/dvg.22720. · DOI
- Kinnear PE, Jay B, Witkop CJ Jr. Albinism. Surv Ophthalmol. 1985;30(2):75-101. https://doi.org/10.1016/0039-6257(85)90077-3. · DOI
- Segerdell E, Ponferrada VG, James-Zorn C, et al. Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase. J Biomed Semantics. 2013;4(1):31. https:// doi.org/10.1186/2041-1480-4-31. · DOI
- Hermansky F, Pudlak P. Albinism associated with hemorrhagic diathesis and unusual pigmented reticular cells in the bone marrow: report of two cases with histochemical studies. Blood. 1959;14:162-169.
- Nakayama T, Nakajima K, Cox A, et al. No privacy, a Xenopus tropicalis mutant, is a model of human Hermansky-Pudlak syn- drome and allows visualization of internal organogenesis dur- ing tadpole development. Dev Biol. 2017;426(2):472-486. https://doi.org/10.1016/j.ydbio.2016.08.020. · DOI
- Khokha MK, Krylov V, Reilly MJ, et al. Rapid gynogenetic map- ping of Xenopus tropicalis mutations to chromosomes. Dev Dyn. 2009;238(6):1398-1406. https://doi.org/10.1002/dvdy.21965. · DOI
- Droin A. Genetic and experimental studies on a new pigment mutant in Xenopus laevis. J Exp Zool. 1992;264(2):196-205. https://doi.org/10.1002/jez.1402640212. · DOI
- Fujii R. Cytophysiology of fish chromatophores. Int Rev Cytol. 1993;143:191-216.
- Tomita H. The lists of the mutants and strains of the medaka, common gambusia, silver crucian carp, goldfish, and golden venus fish maintained in the Laboratory of Fresh water Fish Stocks, Nagoya University. The Fish Biol J MEDAKA. 1992;4: 45-47.
- Kelsh RN, Inoue C, Momoi A, et al. The Tomita collection of medaka pigmentation mutants as a resource for understanding neural crest cell development. Mech Dev. 2004;121(7-8):841- 859. https://doi.org/10.1016/j.mod.2004.01.004. · DOI
- Kimura T, Nagao Y, Hashimoto H, et al. Leucophores are simi- lar to xanthophores in their specification and differentiation processes in medaka. Proc Natl Acad Sci USA. 2014;111(20): 7343-7348. https://doi.org/10.1073/pnas.1311254111. · DOI
- Mueckler M, Thorens B. The SLC2 (GLUT) family of mem- brane transporters. Mol Aspects Med. 2013;34(2-3):121-138. https://doi.org/10.1016/j.mam.2012.07.001. · DOI · Paper page
- Makino S, Fukumura R, Gondo Y. Illegitimate translation cau- ses unexpected gene expression from on-target out-of-frame alleles created by CRISPR-Cas9. Sci Rep. 2016;6:39608. https:// doi.org/10.1038/srep39608. · DOI
- Hentze MW, Kulozik AE. A perfect message: RNA surveilance and nonsense-mediated decay. Cell. 1999;96:307-310.
- Maquat LE, Carmichael GG. Quality control of mRNA function [mini review]. Cell. 2001;104:173-176.
- Lambert JM, Ashi MO, Srour N, Delpy L, Sauliere J. Mecha- nisms and regulation of nonsense-mediated mRNA decay and nonsense-associated altered splicing in lymphocytes. Int J Mol Sci. 2020;21(4):1335. https://doi.org/10.3390/ijms21041335. · DOI
- Matsumoto J. Studies on fine structure and cytochemical prop- erties of erythrophores in swordtail, Xiphophorus helleri, with special reference to their pigment granules (Pterinosomes). J Cell Biol. 1965;27(3):493-504. https://doi.org/10.1083/jcb.27. 3.493. · DOI
- Fu Y, Foden JA, Khayter C, et al. High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat Biotechnol. 2013;31(9):822-826. https://doi.org/10.1038/nbt. 2623. · DOI · Paper page
- Hsu PD, Scott DA, Weinstein JA, et al. DNA targeting specific- ity of RNA-guided Cas9 nucleases. Nat Biotechnol. 2013;31(9): 827-832. https://doi.org/10.1038/nbt.2647. · DOI · Paper page
- Kataoka K, Yamaguchi T, Orii H, Tazaki A, Watanabe K, Mochii M. Visualization of the Xenopus primordial germ cells using a green fluorescent protein controlled by cis elements of the 3 0 untranslated region of the DEADSouth gene. Mech Dev. 2006; 123(10):746-760. https://doi.org/10.1016/j.mod.2006.07.006. · DOI
- Nakajima K, Yaoita Y. Development of a new approach for targeted gene editing in primordial germ cells using TALENs in Xenopus. Biol Open. 2015;4(3):259-266. https://doi.org/10. 1242/bio.201410926. · DOI
- Butler AM, Owens DA, Wang L, King ML. A novel role for sox7 in Xenopus early primordial germ cell development: min- ing the PGC transcriptome. Development. 2018;145(1): dev155978. https://doi.org/10.1242/dev.155978. · DOI
- Nakajima K, Yaoita Y. Highly efficient gene knockout by injec- tion of TALEN mRNAs into oocytes and host transfer in Xenopus laevis. Biol Open. 2015;4(2):180-185. https://doi.org/10. 1242/bio.201410009. · DOI
- Bartoccioni P, Del Rio C, Ratera M, et al. Role of transmem- brane domain 8 in substrate selectivity and translocation of SteT, a member of the L-amino acid transporter (LAT) family. J Biol Chem. 2010;285(37):28764-28776. https://doi.org/10. 1074/jbc.M110.116632. · DOI
- Nishioka M, Ueda H. Blue variants in Hyla arborea japonica. Sci Rep Lab Amphibian Biol, Hiroshima Univ. 1985;7:181-197.
- Cermak T, Doyle EL, Christian M, et al. Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res. 2011;39(12): e82. https://doi.org/10.1093/nar/gkr218. · DOI
- Nakajima K, Yaoita Y. Comparison of TALEN scaffolds in Xenopus tropicalis. Biol Open. 2013;2(12):1364-1370. https://doi. org/10.1242/bio.20136676. · DOI
- Rice P, Longden I, Bleasby A. EMBOSS: the European molecu- lar biology open software suite. Trends Genet. 2000;16(6):276- 277. https://doi.org/10.1016/s0168-9525(00)02024-2. · DOI · Paper page
- Nakayama T, Fisher M, Nakajima K, et al. Xenopus pax6 mutants affect eye development and other organ systems, and have phenotypic similarities to human aniridia patients. Dev Biol. 2015;408(2):328-344. https://doi.org/10.1016/j.ydbio.2015. 02.012. · DOI
- Chang N, Sun C, Gao L, et al. Genome editing with RNA- guided Cas9 nuclease in zebrafish embryos. Cell Res. 2013;23 (4):465-472. https://doi.org/10.1038/cr.2013.45. · DOI
- Josephs EA, Kocak DD, Fitzgibbon CJ, McMenemy J, Gersbach CA, Marszalek PE. Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage. Nucleic Acids Res. 2015;43(18): 8924-8941. https://doi.org/10.1093/nar/gkv892. · DOI
- Jiang F, Doudna JA. CRISPR-Cas9 structures and mechanisms. Annu Rev Biophys. 2017;46:505-529. https://doi.org/10.1146/ annurev-biophys-062215-010822. · DOI · Paper page
- Young JJ, Cherone JM, Doyon Y, et al. Efficient targeted gene dis- ruption in the soma and germ line of the frog Xenopus tropicalis using engineered zinc-finger nucleases. Proc Natl Acad Sci USA. 2011;108(17):7052-7057. https://doi.org/10.1073/pnas.1102030108. · DOI
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Glassfrogs conceal blood in their liver to maintain transparency
Taboada, C., Delia, J., Chen, M., Ma, C., Peng, X., Zhu, X., Jiang, L., Vu, T., Zhou, Q., Yao, J., et al. (2022) · Science · doi:10.1126/science.abl6620 · Cited by 54 · see citing works
- Authors
- Nakajima, K., Shimamura, M., & Furuno, N.
- Affiliations
- Amphibian Research Center, Hiroshima University (JP)
- Hiroshima University (JP)
- Corresponding author
- Nakajima, Keisuke
- Venue
- Developmental Dynamics
- Publisher
- Wiley
- Published
- 2021-04-14
- Volume
- 250
- Issue
- 10
- Pages
- 1420-1431
- ISSN
- 1058-8388 (ISSN-L)
- 1097-0177
- OpenAlex
- W3136426176
- Cited by
- 9
- References
- 1
- Citations by year
- 2026: 2 · 2024: 1 · 2023: 2 · 2022: 4
- FWCI
- 0.91
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Developmental Dynamics (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Japan Society for the Promotion of Science (19K06740)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › melanin and skin pigmentation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Zebrafish Biomedical Research Applications
- Keywords
- Xenopus tropicalis, melanophores, iridophores, knockout mutants, amphibian pigmentation
- MeSH terms
- Animals, Chromatophores, Melanophores, Pigmentation, Xenopus, Gene Expression Regulation, Developmental, Animals, Genetically Modified, Glucose Transport Proteins, Facilitative, Gene Knockout Techniques
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