Origin and evolution of the genetic code: The universal enigma

Cited by (392)

Items 301–392 of 392

1. Natural encoding of information through interacting impulses
   Vladimir S. Lerner · 2016 · Future Technologies Conference
2. Genetic Code
   Claudia Tanja Mierke · 2020 · Biological and medical physics, biomedical engineering
3. Genetic code noise immunity features: Degeneracy and frameshift correction
   Chandra Borah, Tazid Ali · 2022 · Gene Reports
4. The Genetic Code: A Case of Residue Number System (RNS)
   Joshua Apigagua Akanbasiam, Kwame Osei Boateng, Matthew Glover Addo · 2023 · International Journal on Bioinformatics & Biosciences
5. An Application of Residue Number System (RNS) to Molecular Biology
   Joshua Apigagua Akanbasiam, Kwame Osei Boateng, Matthew Glover Addo · 2023 · International Journal on Bioinformatics & Biosciences
6. Genetic code robustness and protein evolvability are correlated and protein-specific
   Brian P. H. Metzger · 2024 · PLoS Biology
7. Circular cut codes in genetic information
   Elena Fimmel, Christian J. Michel, Lutz Strüngmann · 2024 · Biosystems
8. The genetic code and its p -adic ultrametric modeling
   Branko G Dragovich, N.Ž. Mišić · 2024 · Biosystems
9. Persistence and neutrality in interacting replicator dynamics
   Leonardo A. Videla, Mauricio Tejo, Cristóbal Quiñinao, Pablo A. Marquet, Rolando Rebolledo · 2025 · Journal of Mathematical Biology
10. The origin and evolution of life as continuing expansion of viral hosts
    Lev G. Nemchinov · 2025 · Biosystems
11. CMCpy: Genetic Code-Message Coevolution Models in Python
    Peter J. Becich, Brian P. Stark, Harish S. Bhat, David H. Ardell · 2013 · Evolutionary Bioinformatics
12. SETIin vivo: testing the we-are-them hypothesis
    Maxim A. Makukov, V.I. Shcherbak · 2017 · International Journal of Astrobiology
13. Origin of Life, Theories of
    William F. Martin, Martina Preiner · 2017 · Elsevier eBooks
14. Quantum nature of the codon–anticodon interaction
    Alexander A Tulub · 2017 · Biomedical Physics & Engineering Express
15. The Birth of Life
    Roberto Ligrone · 2019 · Springer eBooks
16. Protein lipograms
    Jason Laurie, Amit Kumar Chattopadhyay, Darren R. Flower · 2017 · Journal of Theoretical Biology
17. RNA/Peptide Editing in Small Soluble Binding Proteins: A New Theory for the Origin of Life on Earth's Crust
    Jean‐François Picimbon · 2020
18. Property based analysis: Optimality of RNY comma-free code versus circular code (X) after frameshift errors
    Chandra Borah, Tazid Ali · 2022 · Gene Reports
19. The Origin of the Information System in the RNA/Protein World: A Simulation Model of the Evolution of Translation and the Genetic Code
    Sankar Chatterjee, Surya B. Yadav · 2018 · Preprints.org
20. Natural Encoding of Information through Interacting Impulses
    Vladimir S. Lerner · 2017 · arXiv (Cornell University)
21. Synthetic Genetic Codes Designed to Hinder Evolution
    Jonathan Calles, Isaac Justice, Detravious Brinkley, Alexa Garcia, Drew Endy · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
22. On the origin of the standard genetic code as a fusion of prebiotic single-base-pair codes
    Alexander Nesterov‐Mueller, Popov, R. · 2020 · arXiv (Cornell University)
23. Chaos, Order and Systematics in Evolution of the Genetic Code
    Lei Lei, Zachary Frome Burton · 2020 · Preprints.org
24. Adaptive Partitioning of the tRNA Interaction Interface by Aminoacyl-tRNA-Synthetases
    Andy Collins-Hed, David H. Ardell · 2018 · bioRxiv
25. The Standard Genetic Code Lacks Redundancy For Amino Acid Codons
    Alan M Laibelman · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
26. Bias in the arrival of variation can dominate over natural selection in Richard Dawkins’ biomorphs
    Nora S. Martin, Chico Q. Camargo, Ard A. Louis · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
27. The geometry of chromatin
    Subhash C. Kak · 2023
28. gTranslate: rapid and accurate translation table prediction for prokaryotic genomes
    Pierre-Alain Chaumeil, Philip Hugenholtz, Donovan H. Parks · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
29. Stochastic many-body problems in ecology, evolution, neuroscience, and systems biology
    Thomas Butler · 2010 · Illinois Digital Environment for Access to Learning and Scholarship (University of Illinois at Urbana-Champaign)
30. Codon usage bias of the overlapping genes in microbial genomes
    Preethy Nair · 2010 · Tampere University Institutional Repository (Tampere University)
31. The information and its observer: external and internal information processes, information cooperation, and the origin of the observer intellect
    Vladimir S. Lerner · 2012 · arXiv (Cornell University)
32. An Ode to the Code: Evidence for Fine-Tuning in the Standard Codon Table
    Jed C. Macosko, Amanda M. Smelser · 2013
33. Finding a needle in haystack: the Eukaryotic selenoproteome
    Charles E. Chapple · 2009 · Hispana
34. Origins of life before the cell: echos from the past with broad implications in our future
    Jaime Hernández, José Henry Osório, Jeanneth Pérez · 2015 · Brazilian Journal of Biological Sciences
35. Algoritmos evolutivos aplicados na investigação da adaptabilidade do código genético
    Lariza Laura de Oliveira · 2016
36. On the Contribution of Protein Spatial Organization to the Physicochemical Interconnection between Proteins and
    Andreas Beier, Bojan Žagrović, Anton A. Polyansky, Niles Lehman · 2014
37. Многомерная $p$-адическая метрика и генетический код
    Sergei Vladimirovich Kozyrev, Andrei Yu. Khrennikov · 2011 · Вестник Самарского государственного технического университета Серия Физико-математические науки
38. Membrane bioenergetics at major transitions in evolution
    VR Sojo Martinez · 2016 · UCL Discovery (University College London)
39. The Evolution of DNA and the Genetic Code
    Laurence A. Cole · 2016 · Elsevier eBooks
40. Characterization of any species observing their Codon Biasing effect
    Paras Pokhrel, Tanuja Das, Goutam Kumar Saha · 2015 · International Symposium on Advanced Computing and Communication (ISACC)
41. Fall 2009 Emergent States of Matter Term Essay
    Samuel O. Skinner · 2009
42. Multilevel capacities for the codon mutation channel
    Dawit Nigatu, Werner Henkel · 2018 · International Symposium on Turbo Codes and Iterative Information Processing
43. Distributed chaos in DNA
    A. Bershadskii · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
44. Next Generation Sequencing (NGS): What Can Be Sequenced?
    Anja‐Katrin Bosserhoff, Melanie Kappelmann‐Fenzl · 2021 · Learning materials in biosciences
45. The Origin of the Genetic Code
    Kenji Ikehara · 2021 · Springer eBooks
46. Visualizing Amino Acid Substitutions in a Physicochemical Vector Space
    Louis R. Nemzer · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
47. Происхождение генетического кода и трансляции в рамках современных концепций происхождения жизни
    Л.Г. Кондратьева, М.С. Дьячкова, Alexey Vladimirovich Galchenko · 2022 · Biochemistry (Moscow)
48. Is Coronavirus Pushing Humanity Towards an Evolutionary Jump as It Did Long Back When It Initiated Making a Brain?
    Pushpendra Singh, Kanad Ray, Anirban Bandyopadhyay · 2022 · Studies in Rhythm Engineering
49. A felgyorsult fehérje körforgás szerepe a transzlációs hibákkal szembeni alkalmazkodási folyamatokban
    Dorottya Kalapis · 2017
50. Genetic code
    Ellen E. Quillen · 2018 · The International Encyclopedia of Biological Anthropology
51. Chaos, Order and Systematics in Evolution of The Genetic Code
    Lei Lei, Zachary Frome Burton · 2020 · Preprints.org
52. Melanoma Detection by Analysing Mutations in Gene DNA Sequences and Their Primary Protein Structures
    Pabasara Peiris, J. A. A. M. Jayaweera, Gamage Upeksha Ganegoda · 2022 · International Conference on Image Processing and Robotics (ICIPRoB)
53. Residue Number System (RNS) Sequence Comparison and Mutation (Error) Analysis
    Joshua Apigagua Akanbasiam, Kwame Osei Boateng, Matthew Glover Addo · 2023 · International Journal on Bioinformatics & Biosciences
54. Determining the effects of temperature on the evolution of bacterial tRNA pools
    Vatsal Jain, Alexander L. Cope · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
55. Codon and Reverse Codon: A Theoretical Approach to Reinterpret the Genetic Code Table
    Nicola Serra, Paola Di Carlo · 2023 · Cureus
56. Molecular Identification of Phyllanthus amarus Schumach. & Thonn. Phyllanthaceae
    GO Alade · 2023 · Global Journal of Pharmacy & Pharmaceutical Sciences
57. A Mechanistic Account of Biological Computation
    Lorenzo Baravalle, Davide Vecchi · 2024 · The British Journal for the Philosophy of Science
58. Where Can We Find Approaches to Understanding Evolutionary Processes?
    Markus Knoflacher · 2024 · Springer eBooks
59. A Survey of the Battlefield for the Origin of Life
    2024 · Wiley eBooks
60. Maximal Genetic Code Symmetry Is a Physicochemical Purine–Pyrimidine Symmetry Language for Transcription and Translation in the Flow of Genetic Information from DNA to Proteins
    Marija Rosandić, V. Paar · 2024 · International Journal of Molecular Sciences
61. Main Directions and Factors Determining the Variability of CYTB Amino Acid Sequences in Mountain Voles (Alticola, Rodentia, and Arvicolinae)
    V. Yu. Kovaleva, Igor Viktorovich Moroldoev, Yu. N. Litvinov, Kirill Efimov, Vadim M. Efimov · 2024 · Contemporary Problems of Ecology
62. The Cell as a Complex System and the S-Space Axiomatic Wave Model Adequacy Checking
    2024 · Advances in religious and cultural studies (ARCS) book series
63. Strained encounters of the anthropogene: preservation and extinction in Tatsuaki Ishiguro’s ‘It is with the Deepest Sincerity that I Offer Prayers’
    Lara Choksey · 2025 · Medical Humanities
64. Identifying Silent Mutations for the Introduction of Restriction Sites in Open Reading Frames
    Y. B. Wu, Evelyn Sattlegger, Anuradha Mathrani · 2024 · International Conference on Sustainable Technology and Engineering (i-COSTE)
65. The Role of Mutations, Addition of Amino Acids, and Exchange of Genetic Information in the Coevolution of Primitive Coding Systems
    Konrad Pawlak, Paweł Błażej, Dorota Mackiewicz, Paweł Mackiewicz · 2025 · International Journal of Molecular Sciences
66. Your genetic code has lots of ‘words’ for the same thing – information theory may help explain the redundancies
    Subhash C. Kak · 2023 · The Conversation
67. Information optimality and the geometry of chromatin
    Subhash C. Kak · 2025 · Biophysical Reviews
68. First growth, then information: the path to genetic heredity in protocells
    Raquel Nunes Palmeira, Marco Colnaghi, Andrew Pomiankowski, Nick J. Lane · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
69. Additional file 1 of Large-scale in silico mutagenesis experiments reveal optimization of genetic code and codon usage for protein mutational robustness
    Martin Schwersensky, Marianne J. Rooman, Fabrizio Pucci · 2020 · Figshare
70. Biosystems and Bioinspired Systems
    Octavian M. Iordache · 2010 · Understanding complex systems
71. Maxwell® an AAAA classifier well-suited to biomedical data clustering
    Joël Gardes, Jules Brice Tchatchueng-Mbougua, Christophe Maldivi, Mariem Jelassi, Houssem Ben Khalfallah, Jacques Demongeot A · 2025 · Frontiers in Applied Mathematics and Statistics
72. Reductio plenitude and contingency in evolutionary thought
    Cornelius G. Hunter · 2025 · Belgrade Philosophical Annual
73. Mathematical Analysis for a Class of Stochastic Copolymerization Processes
    David F. Anderson, Jingyi Ma, Praful Gagrani · 2026 · Bulletin of Mathematical Biology
74. Directed information panspermia as a possible method of interstellar communication
    Sh. M. Kocharyan · 2026 · Frontiers in Astronomy and Space Sciences
75. Mapping the inter- and intra-genic codon-usage landscape in Homo sapiens
    Maahil Arshad, Matthew Uchmanowicz, Vanshika Rana, Brett Trost, Stephen W. Scherer, Muhammad Arshad Rafiq · 2026 · NAR Genomics and Bioinformatics
76. Entropy as Architect: Resolving the Second Law Paradox Through Constructive Thermodynamic Regulation
    Juan Francisco Culajay · 2026 · SSRN Electronic Journal
77. Circular codes in the evolution of the genetic code
    Martin Starman · 2020
78. Painlevé Dynamics and the Origin of Life: A Universal Chemical Pathway
    Michel R. P. Planat · 2026 · Sci
79. Long-term evolution of regulatory DNA sequences. Part 1: simulations on global, biophysically-realistic genotype–phenotype maps
    Elia Mascolo, Réka Borbély, Santiago Herrera‐Álvarez, Călin C. Guet, Justin Crocker, Gašper Tkačik · 2026 · Current Opinion in Genetics & Development
80. Experimental verification of the error minimization theory using non-standard genetic codes constructed in vitro
    Ryota Miyachi, Norikazu Ichihashi · 2026 · eLife
81. The dynamics of “silent” variation in Mimulus guttatus : Codon usage bias and linked selection
    Luis Javier Madrigal-Roca, John K. Kelly · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
82. Defense and Immune Systems Evolving from Co-opted Selfish Genetic Elements—From the Origin of Life to the Present
    Felix Broecker · 2026 · Springer eBooks
83. Experimental verification of the error minimization theory using non-standard genetic codes constructed in vitro
    Ryota Miyachi, Norikazu Ichihashi · 2026 · eLife
84. Protocode mats and living membranes: A new hypothesis for the origin of the standard genetic code
    Alexander Nesterov‐Mueller, Dimitry Schmidt · 2026 · Biosystems
85. The genetic code at the balance point of error and demand
    Yudam Seo, Tsvi Tlusty, Junghyo Jo · 2026 · PLoS Computational Biology
86. Physico-chemical aspects of protocode mats: a code-first reconstruction
    Alexander Nesterov‐Mueller, Dimitry Schmidt · 2026 · SSRN Electronic Journal
87. Triplet architecture enables deep error-minimization of the genetic code
    Hannah E. Ribbeck, Janak Paudyal, Boggavarapu Kiran · 2026 · Research Square
88. Bibliography
    William Lane Craig · 2026
89. Genomic Codon Usage is Structurally Consistent with First-Classness Across the Tree of Life
    Douglas Joseph Huntington Moore · 2026 · Journal of Molecular Evolution
90. gTranslate: rapid and accurate translation table prediction for prokaryotic genomes
    Pierre-Alain Chaumeil, Philip Hugenholtz, Donovan H. Parks · 2026 · PeerJ
91. Essential Genes Are Enriched in Semantic Error-Protected Coding Sequences: A Communication-Theoretic Analysis of the Genetic Code
    Inma Conde, Esther‐Lydia Silva‐Ramírez, Francisco Luis Cumbrera · 2026 · Biosystems
92. High-Throughput Analysis of the Intestinal Microbiota in Clostridium Difficile-Associated Disease
    Adam M. Berg · 2013 · Figshare