DNA bending creates favored sites for retroviral integration: an explanation for preferred insertion sites in nucleosomes

Crystal Structure of a CAP-DNA Complex: the DNA Is Bent by 90°

Schultz, S. C., Shields, G. C., & Steitz, T. A. (1991) · Science · doi:10.1126/science.1653449 · Cited by 1,116

Structure of the nucleosome core particle at 7 Å resolution

Richmond, T. J., Finch, J. T., Rushton, B., Rhodes, D., & Klug, A. (1984) · Nature · doi:10.1038/311532a0 · Cited by 1,061

Integration of murine leukemia virus DNA depends on mitosis.

Roe, T., Reynolds, T. C., Yu, G., & Brown, P. O. (1993) · The EMBO Journal · doi:10.1002/j.1460-2075.1993.tb05858.x · Cited by 921

HIV-1 DNA integration: Mechanism of viral DNA cleavage and DNA strand transfer

Engelman, A., Mizuuchi, K., & Craigie, R. (1991) · Cell · doi:10.1016/0092-8674(91)90297-c · Cited by 655

Bent helical structure in kinetoplast DNA

Marini, J. C., Levene, S. D., Crothers, D. M., & Englund, P. T. (1982) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.79.24.7664 · Cited by 596

Crystal structure of a MATα2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions

Wolberger, C., Vershon, A. K., Liu, B., Johnson, A. D., & Pabo, C. O. (1991) · Cell · doi:10.1016/0092-8674(91)90526-5 · Cited by 525

Structure of the DNA-Eco RI Endonuclease Recognition Complex at 3 Å Resolution

McClarin, J. A., Frederick, C., Wang, B., Greene, P. J., Boyer, H. W., Grable, J., & Rosenberg, J. M. (1986) · Science · doi:10.1126/science.3024321 · Cited by 487

Chromatin Structure and Function

(1999) · Cell · doi:10.1016/s0092-8674(00)81490-7 · Cited by 441

Intrinsically bent DNA.

Crothers, D. M., Haran, T. E., & Nadeau, J. G. (1990) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)39080-5 · Cited by 427

DNA LOOPING

Schleif, R. F. (1992) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.61.070192.001215 · Cited by 423

Substrate recognition and induced DNA deformation by transposase at the target-capture stage of Tn10 transposition

Pribil, P. A., & Haniford, D. B. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.4135 · Cited by 34

Retroviral intasomes search for a target DNA by 1D diffusion which rarely results in integration

Jones, N. D., Lopez, M. A., Hanne, J., Peake, M. B., Lee, J., Fishel, R. A., & Yoder, K. E. (2016) · Nature Communications · doi:10.1038/ncomms11409 · Cited by 33

Retroviral cDNA Integration: Mechanism, Applications and Inhibition

Hansen, M. S. T., Carteau, S., Hoffmann, C. J., Li, L., & Bushman, F. D. (1998) · Springer eBooks · doi:10.1007/978-1-4899-1739-3_3 · Cited by 33

Target DNA capture by HIV-1 integration complexes

Miller, M. D., Bor, Y.-C., & Bushman, F. D. (1995) · Current Biology · doi:10.1016/s0960-9822(95)00209-0 · Cited by 32

Evolutionary force of AT‐rich repeats to trap genomic and episomal DNAs into the rice genome: lessons from endogenous pararetrovirus

Liu, R., Koyanagi, K. O., Chen, S., & Kishima, Y. (2012) · The Plant Journal · doi:10.1111/tpj.12002 · Cited by 31

RNA polymerase III interferes with Ty3 integration

Connolly, C. M., & Sandmeyer, S. B. (1997) · FEBS Letters · doi:10.1016/s0014-5793(97)00200-7 · Cited by 31

Ty3, a Position‐Specific, Gypsy‐Like Element inSaccharomyces cerevisiae

Sandmeyer, S. B., Aye, M., & Menees, T. M. (2007) · Wiley eBooks · doi:10.1128/9781555817954.ch27 · Cited by 31

Rescue of Multiple Viral Functions by a Second-Site Suppressor of a Human Immunodeficiency Virus Type 1 Nucleocapsid Mutation

Cimarelli, A., Sandin, S., Höglund, S., & Luban, J. (2000) · Journal of Virology · doi:10.1128/jvi.74.9.4273-4283.2000 · Cited by 30

Matrix attachment regions as targets for retroviral integration

Johnson, C., & Levy, L. S. (2005) · Virology Journal · doi:10.1186/1743-422x-2-68 · Cited by 30

Clonal Expansion of Human Immunodeficiency Virus–Infected Cells and Human Immunodeficiency Virus Persistence During Antiretroviral Therapy

Mullins, J. I., & Frenkel, L. M. (2017) · The Journal of Infectious Diseases · doi:10.1093/infdis/jiw636 · Cited by 29

Engineered Sleeping Beauty transposase redirects transposon integration away from genes

Miskey, C., Kesselring, L., Querques, I., Abrusán, G., Barábas, O., & Ivics, Z. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkac092 · Cited by 29

HIV-1 Preintegration Complex Preferentially Integrates the Viral DNA into Nucleosomes Containing Trimethylated Histone 3-Lysine 36 Modification and Flanking Linker DNA

Sapp, N., Burge, N. L., Cox, K. L., Thapa, S., Prakash, P., Balasubramaniam, M., Christensen, D. E., Li, M., Linderberger, J., Kvaratskhelia, M., et al. (2022) · Journal of Virology · doi:10.1128/jvi.01011-22 · Cited by 31

DNA Physical Properties and Nucleosome Positions Are Major Determinants of HIV-1 Integrase Selectivity

Naughtin, M., Haftek-Terreau, Z., Xavier, J., Meyer, S., Silvain, M., Jaszczyszyn, Y., Levy, N., Miele, V., Benleulmi, M. S., Ruff, M., et al. (2015) · PLoS ONE · doi:10.1371/journal.pone.0129427 · Cited by 34

Sites of retroviral DNA integration: From basic research to clinical applications

Serrao, E., & Engelman, A. (2015) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.3109/10409238.2015.1102859 · Cited by 32

Natural History of Transposition in the Green Alga Chlamydomonas reinhardtii: Use of the AMT4 Locus as an Experimental System

Kim, K.-S., Kustu, S. G., & Inwood, W. B. (2006) · Genetics · doi:10.1534/genetics.106.058263 · Cited by 27

Stimulation of Tat-independent transcriptional processivity from the HIV-1 LTR promoter by matrix attachment regions

Rampalli, S. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg410 · Cited by 26

Target sites for SINE integration in Brassica genomes display nuclear matrix binding activity

Tikhonov, A. P., Lavie, L., Tatout, C., Bennetzen, J. L., AVRAMOVA, Z. V., & Deragon, J. (2001) · Chromosome Research · doi:10.1023/a:1016650830798 · Cited by 25

Mechanisms of LTR‐Retroelement Transposition: Lessons from Drosophila melanogaster

Нефедова, Л. Н., & Kim, A. I. (2017) · Viruses · doi:10.3390/v9040081 · Cited by 24

An assessment of three dinucleotide parameters to predict DNA curvature by quantitative comparison with experimental data

Kanhere, A. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg362 · Cited by 24

Design of artificial sequence-specific DNA bending ligands.

Liberles, D. A., & Dervan, P. B. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.18.9510 · Cited by 24

Nanosecond Molecular Dynamics of Hybrid Triplex and Duplex of Polycation Deoxyribonucleic Guanidine Strands with a Complimentary DNA Strand

Luo, J., & Bruice, T. C. (1998) · Journal of the American Chemical Society · doi:10.1021/ja973337i · Cited by 24

DNA minicircles clarify the specific role of DNA structure on retroviral integration

Pasi, M., Mornico, D., Volant, S., Juchet, A., Batisse, J., Bouchier, C., Parissi, V., Ruff, M., Lavery, R., & Lavigne, M. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw651 · Cited by 26

Hsmar1 Transposition Is Sensitive to the Topology of the Transposon Donor and the Target

Bouuaert, C. C., & Chalmers, R. (2013) · PLoS ONE · doi:10.1371/journal.pone.0053690 · Cited by 23

Chromatin tethering and retroviral integration: Recent discoveries and parallels with DNA viruses

Meehan, A. M., & Poeschla, E. M. (2009) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2009.10.001 · Cited by 24

Role of DNA End Distortion in Catalysis by Avian Sarcoma Virus Integrase

Katz, R. A., DiCandeloro, P., Kukolj, G., & Skalka, A. M. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m104632200 · Cited by 23

Anatomy of a preferred target site for the bacterial insertion sequence IS90311Edited by M. Gottesman

Hu, W.-Y., Thompson, W. A., Lawrence, C. E., & Derbyshire, K. M. (2001) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.4421 · Cited by 23

Controlled and localized genetic manipulation in the brain

Aronoff, R., & Petersen, C. C. H. (2006) · Journal of Cellular and Molecular Medicine · doi:10.1111/j.1582-4934.2006.tb00403.x · Cited by 22

Inducing and modulating anisotropic DNA bends by pseudocomplementary peptide nucleic acids

Kuhn, H., Cherny, D. I., Demidov, V. V., & Frank-Kamenetskii, M. D. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0308756101 · Cited by 21

Retroviral integrase protein and intasome nucleoprotein complex structures

Grawenhoff, J., & Engelman, A. (2017) · World Journal of Biological Chemistry · doi:10.4331/wjbc.v8.i1.32 · Cited by 21

Host Proteins in Retroviral DNA Integration

Bushman, F. D. (1999) · Advances in virus research · doi:10.1016/s0065-3527(08)60303-6 · Cited by 20

Cancer gene discovery in mouse and man

Mattison, J., van der Weyden, L., Hubbard, T., & Adams, D. J. (2009) · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer · doi:10.1016/j.bbcan.2009.03.001 · Cited by 21

Burkholderia xenovorans RcoM Bx -1, a Transcriptional Regulator System for Sensing Low and Persistent Levels of Carbon Monoxide

Kerby, R. L., & Roberts, G. P. (2012) · Journal of Bacteriology · doi:10.1128/jb.01024-12 · Cited by 19

Fidelity of Target Site Duplication and Sequence Preference during Integration of Xenotropic Murine Leukemia Virus-Related Virus

Kim, S., Rusmevichientong, A., Dong, B., Remenyi, R., Silverman, R. H., & Chow, S. A. (2010) · PLoS ONE · doi:10.1371/journal.pone.0010255 · Cited by 21

HIV Integration: Ini1 for integration?

Miller, M. D., & Bushman, F. D. (1995) · Current Biology · doi:10.1016/s0960-9822(95)00074-1 · Cited by 19

Retroviral integrase: Structure, mechanism, and inhibition

Passos, D. O., Li, M., Craigie, R., & Lyumkis, D. (2021) · The Enzymes · doi:10.1016/bs.enz.2021.06.007 · Cited by 20

SATB1-Binding Sequences and Alu -Like Motifs Define a Unique Chromatin Context in the Vicinity of Human Immunodeficiency Virus Type 1 Integration Sites

Kumar, P. P., Mehta, S. S., Purbey, P. K., Notani, D., Jayani, R. S., Purohit, H. J., Raje, D. V., Ravi, D. S., Bhonde, R. R., Mitra, D., et al. (2007) · Journal of Virology · doi:10.1128/jvi.01405-06 · Cited by 17

Integration specificity of the hobo element of Drosophila melanogaster is dependent on sequences flanking the integration site

Saville, K., Warren, W. D., Atkinson, P. W., & O’Brochta, D. A. (1999) · Genetica · doi:10.1023/a:1003712619487 · Cited by 17

Antisense-mediated Repression of DNA Topoisomerase II Expression Leads To an Impairment of HIV-1 Replicative Cycle

Bouillé, P., Subra, F., Mouscadet, J. F., & Auclair, C. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1998.2360 · Cited by 16

Integration specificity of LTR-retrotransposons and retroviruses in the Drosophila melanogaster genome

Нефедова, Л. Н., Mannanova, M. M., & Kim, A. I. (2011) · Virus Genes · doi:10.1007/s11262-010-0566-4 · Cited by 15

Basis of HTLV Type 1 Target Site Selection

Leclercq, I., Mortreux, F., Gabet, A., Jonsson, C. B., & Wattel, E. (2000) · AIDS Research and Human Retroviruses · doi:10.1089/08892220050193100 · Cited by 15

Retroviral insertions in the VISION database identify molecular pathways in mouse lymphoid leukemia and lymphoma

Weiser, K. C., Liu, B., Hansen, G. M., Skapura, D. G., Hentges, K. E., Yarlagadda, S. P., Morse, H. C., & Justice, M. J. (2007) · Mammalian Genome · doi:10.1007/s00335-007-9060-2 · Cited by 14

Tdd-4, a DNA transposon of Dictyostelium that encodes proteins similar to LTR retroelement integrases

Wells, D. J. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.11.2408 · Cited by 14

Interactions of Host Proteins with the Murine Leukemia Virus Integrase

Studamire, B., & Goff, S. P. (2010) · Viruses · doi:10.3390/v2051110 · Cited by 14

Isolation and Analysis of Retroviral Integration Targets by Solo Long Terminal Repeat Inverse PCR

Jin, Y. F., Ishibashi, T., Nomoto, A., & Masuda, M. (2002) · Journal of Virology · doi:10.1128/jvi.76.11.5540-5547.2002 · Cited by 13

Enhancement and rescue of target capture in Tn10 transposition by site‐specific modifications in target DNA

Pribil, P. A., Wardle, S. J., & Haniford, D. B. (2004) · Molecular Microbiology · doi:10.1111/j.1365-2958.2004.04046.x · Cited by 12

The HIV/AIDS epidemic: its evolutionary implications for human ecology with special reference to the immune system

Caldararo, N. (1996) · The Science of The Total Environment · doi:10.1016/s0048-9697(96)05267-9 · Cited by 12

Nanosecond Molecular Dynamics Study of a Polycation Ribonucleic Guanidine (RNG) Duplexed with a Complementary DNA Oligomer Strand

Luo, J., & Bruice, T. C. (1997) · Journal of the American Chemical Society · doi:10.1021/ja970188v · Cited by 12

Target Capture during Mos1 Transposition

Pflieger, A., Jaillet, J., Petit, A., Augé‐Gouillou, C., & Renault, S. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.523894 · Cited by 11

Modeling Insertional Mutagenesis Using Gene Length and Expression in Murine Embryonic Stem Cells

Nord, A. S., VRANIZAN, K. M., Tingley, W. G., Zambon, A. C., Hanspers, K., Fong, L. G., Hu, Y., Bacchetti, P., Ferrin, T. E., Babbitt, P. C., et al. (2007) · PLoS ONE · doi:10.1371/journal.pone.0000617 · Cited by 11

Nucleosome DNA unwrapping does not affect prototype foamy virus integration efficiency or site selection

Mackler, R. M., Jones, N. D., Gardner, A. M., Lopez, M. A., Howard, C. J., Fishel, R. A., & Yoder, K. E. (2019) · PLoS ONE · doi:10.1371/journal.pone.0212764 · Cited by 10

Intrinsic Characteristics of Neighboring DNA Modulate Transposable Element Activity in Drosophila melanogaster

Esnault, C., Azhahianambi, P., Pilitt, K. L., & O’Brochta, D. A. (2010) · Genetics · doi:10.1534/genetics.110.122168 · Cited by 10

Evidence that the insertion events of IS2 transposition are biased towards abrupt compositional shifts in target DNA and modulated by a diverse set of culture parameters

Gonçalves, G. A. L., Oliveira, P. H., Gomes, G. G., Prather, K. L. J., Lewis, L. A., Prazeres, D. M. F., & Monteiro, G. A. (2014) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-014-5695-6 · Cited by 10

Induction of interleukin-1 and glucocorticoid hormones by HIV promotes viral replication and links human chromosome 2 to AIDS pathogenesis: genetic mechanisms and therapeutic implications

Corley, P. A. (1997) · Medical Hypotheses · doi:10.1016/s0306-9877(97)90040-2 · Cited by 10

Target Integration by a Chimeric Sp1 Zinc Finger Domain-Moloney Murine Leukemia Virus Integrase in vivo

Peng, W., Chang, C.-M., & Lin, T. (2002) · Journal of Biomedical Science · doi:10.1007/bf02256029 · Cited by 10

Specialized DNA Structures Act as Genomic Beacons for Integration by Evolutionarily Diverse Retroviruses

Kohio, H. P., Ajoge, H. O., Coleman, M. D., Ndashimye, E., Gibson, R. M., Arts, E. J., & Barr, S. D. (2023) · Viruses · doi:10.3390/v15020465 · Cited by 7

Specific features of T-DNA insertion regions in transgenic plants

Филипенко, Е. А., Дейнеко, Е. В., & Константинович, Ш. В. (2009) · Russian Journal of Genetics · doi:10.1134/s1022795409110040 · Cited by 7

Nucleosomes affect local transformation efficiency

Aslankoohi, E., Voordeckers, K., Sun, H., Sánchez‐Rodríguez, A., van der Zande, E., Marchal, K., & Verstrepen, K. J. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks777 · Cited by 7

Prototype foamy virus integrase is promiscuous for target choice

Mackler, R. M., Lopez, M. A., Osterhage, M. J., & Yoder, K. E. (2018) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2018.07.031 · Cited by 7

A novel class of supercoil-independent nuclease hypersensitive site is comprised of alternative DNA structures that flank eukaryotic genes

Vernick, K. D., & McCutchan, T. F. (1998) · Journal of Molecular Biology · doi:10.1006/jmbi.1998.1806 · Cited by 7

Mouse mammary tumor virus derived from wild mice does not target Notch-4 protooncogene for the development of mammary tumors in inbred mice

Sarkar, N. H. (2009) · Virology · doi:10.1016/j.virol.2009.02.035 · Cited by 6

Retroviral prototype foamy virus intasome binding to a nucleosome target does not determine integration efficiency

Kotlar, R. M., Jones, N. D., Senavirathne, G., Gardner, A. M., Messer, R. K., Tan, Y. Y., Rabe, A. J., Fishel, R. A., & Yoder, K. E. (2021) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2021.100550 · Cited by 6

Counterion and pH‐Mediated Structural Changes in Charged Biopolymer Gels

Horkay, F., Basser, P. J., Hecht, A., & Geissler, E. (2010) · Macromolecular Symposia · doi:10.1002/masy.201050542 · Cited by 6

Transposition as a Way of Existence: Phage Mu

Mit'kina, L. N. (2003) · Russian Journal of Genetics · doi:10.1023/a:1023779500021 · Cited by 6

Linearization and integration of DNA into cells preferentially occurs at intrinsically curved regions from human LINE-1 repetitive element

Kusakabe, T., Sugimoto, Y., Maeda, T., Nakajima, Y., Miyano, M., Nishikawa, J.-I., Toné, S., Kawaguchi, Y., Koga, K., & Ohyama, T. (2001) · Gene · doi:10.1016/s0378-1119(01)00631-x · Cited by 6

Impairment of Moloney murine leukemia virus integration in a cell line underexpressing DNA topoisomerase II.

Bouillé, P., Subra, F., Goulaouic, H., Carteau, S., & Auclair, C. (1995) · PubMed · Cited by 6

Beyond reverse transcription: molecular mechanisms and emerging paradigms in retroviral replication

Jehad, M. A., Ali, L. M., Pillai, V. N., Prabhu, S. G., Mustafa, F., & Rizvi, T. A. (2026) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuaf066 · Cited by 5

Integration of the yeast retrovirus-like element Ty3 upstream of a human tRNA gene expressed in yeast

Dildine, S. L., & Sandmeyer, S. B. (1997) · Gene · doi:10.1016/s0378-1119(97)00167-4 · Cited by 5

HIV-1 Integration into Chromatin: New Insights and Future Perspectives

Lesbats, P., Lavigne, M., & Parissi, V. (2011) · Future Virology · doi:10.2217/fvl.11.84 · Cited by 7

Presteady-state Analysis of Avian Sarcoma Virus Integrase

Bao, K. K., Skalka, A. M., & Wong, I. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m111314200 · Cited by 5

Presteady-state Analysis of Avian Sarcoma Virus Integrase

Bao, K. K., Skalka, A. M., & Wong, I. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m111315200 · Cited by 5

The role of constrained self-organization in genome structural evolution

von Sternberg, R. (1996) · Acta Biotheoretica · doi:10.1007/bf00048418 · Cited by 5

A Chimeric Ty3/Moloney Murine Leukemia Virus Integrase Protein Is Active In Vivo

Dildine, S. L., Respess, J. G., Jolly, D. J., & Sandmeyer, S. B. (1998) · Journal of Virology · doi:10.1128/jvi.72.5.4297-4307.1998 · Cited by 5

Retroviral Vector Design for Cancer Gene Therapy

Baum, C., Ostertag, W., von Laer, D., & Stocking, C. (2002) · Elsevier eBooks · doi:10.1016/b978-012437551-2/50002-1 · Cited by 5

Gene delivery to the nervous system using retroviral vectors

Sena‐Esteves, M., Aghi, M. K., Pechan, P. A., Kaye, E. M., & Breakefield, X. O. (1995) · Elsevier eBooks · doi:10.1016/b978-012437165-1/50012-3 · Cited by 5

Structural dynamics of native and V260E mutant C-terminal domain of HIV-1 integrase

Balasubramanian, S., Rajagopalan, M., & Ramaswamy, A. (2015) · Journal of Computer-Aided Molecular Design · doi:10.1007/s10822-015-9830-y · Cited by 4

Why bacteria derived R-M nucleic enzymatic peptides are likely efficient therapeutic molecules for use in the design and development of novel HIV inhibitory strategies

Wayengera, M. (2008) · AFRICAN JOURNAL OF BIOTECHNOLOGY · doi:10.5897/ajb07.516 · Cited by 4

Epigenetische Effekte bei transgenen Pflanzen: Auswirkungen auf die Risikobewertung

Moch, K. (2006) · Cited by 4

Specific endonuclease activity of integrase encoded by the mdg4 (gypsy) retrotransposon

Glukhov, I. L., Ilyin, Y. V., & Ivanov, V. A. (2000) · Molecular Biology · doi:10.1007/bf02759646 · Cited by 4

The role of chromatin in retroviral preintegration complex function

Sapp, N., Prakash, P., Chakraborty, R., Balasubramaniam, M., & Dash, C. (2025) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2025.110440 · Cited by 3

Methodological landscape in the field of integration site identification of retroviruses and retroviral vectors

Kochergin-Nikitsky, K. S., Лавров, А. В., & Smirnikhina, S. (2025) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2025.1708724 · Cited by 4

DNA strand breaks and gaps target retroviral intasome binding and integration

Senavirathne, G., London, J. A., Gardner, A., Fishel, R. A., & Yoder, K. E. (2023) · Nature Communications · doi:10.1038/s41467-023-42641-4 · Cited by 3

Structural Properties of Hybrid Triplex of Polycation Deoxyribonucleic S-methylthiourea (DNmt) Strands with a Complementary DNA Strand, Probed by Nanosecond Molecular Dynamics

Luo, J., & Bruice, T. C. (2000) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2000.10506554 · Cited by 3

A Shared, Non-canonical DNA Conformation Detected at DNA/Protein Contact Sites and Bent DNA in the Absence of Supercoiling or Cognate Protein Binding

Economides, A. N., Everdeen, D., & Panayotatos, N. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.40.24836 · Cited by 3

Retroviral integration sites (RIS) mark cis-regulatory elements

Ng, C. E. L., Ito, Y., & Osato, M. (2008) · Critical Reviews in Oncology/Hematology · doi:10.1016/j.critrevonc.2008.10.008 · Cited by 2

Establishment of endogenous pararetroviruses in the rice genome

Liu, R., & Kishima, Y. (2014) · Elsevier eBooks · doi:10.1016/b978-0-12-411584-2.00012-3 · Cited by 2

Retroviral Integration Target Site Selection

Ciuffi, A., & Bushman, F. D. (2011) · Wiley eBooks · doi:10.1002/9781118015377.ch5 · Cited by 2

Core nucleosomes are refractory to lentiviral DNA integration

Hope, J., Punch, E. K., Cook, N., Singer, M. R., Joshi, D., Singh, P. K., Nans, A., Sweeney, N. P., Vanderlinden, W., Engelman, A., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-76698-8 · Cited by 1

Approaches to site-directed DNA integration based on transposases and retroviral integrases

Knyazhanskaya, E. S., Кондрашина, О. В., & Gottikh, M. (2011) · Molecular Biology · doi:10.1134/s0026893311060069 · Cited by 1

Transcriptional Activation of the Granulocyte–Macrophage Colony-Stimulating Factor Receptor Gene in Cell Mutants

Laker, C., Friel, J., Franz, M.-J., Hara, T., Papadopoulos, P., Ostertag, W., & Stocking, C. (2000) · Experimental Cell Research · doi:10.1006/excr.2000.4971 · Cited by 1

A model for mapping of Ebola and Marburg RNA integration sites in rhesus Macaca mulatta genome in silico: Ebola virus acceptors sites located on chromosomes 4, 6, 7, 8, 9, 14 and 15.

Wayengera, M., Byarugaba, W., Henry, K., Olobo, J., & Mulindwa, K. (2009) · AFRICAN JOURNAL OF BIOTECHNOLOGY · doi:10.5897/ajb2009.000-9282 · Cited by 1

THE MECHANISMS, APPLICATIONS, AND TARGET SITE SELECTION OF BACTERIOPHAGE MU MINIMAL IN VITRO DNA TRANSPOSITION REACTION

Haapa-Paananen, S. M. (2002) · Työväentutkimus Vuosikirja · Cited by 1

Physical Principles of Retroviral Integration in the Human GenomePreprint

Michieletto, D., Lusic, M., Marenduzzo, D., & Orlandini, E. (2018) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/247437 · Cited by 1

Análisis de la variación genómica y la evolución del grupo Fc1 de retrovirus endógenos humanos

Bello, A. F. (2014)

Mapping of HIV-1 integrase preferences for target site selection with various oligonucleotides

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Mannanova, M. M., Нефедова, Л. Н., & Kim, A. I. (2011) · Russian Journal of Genetics Applied Research · doi:10.1134/s2079059711060062

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Structure-Assisted Design of Drugs Towards HIV-1 and Malaria Targets Applied on Reverse Transcriptase and Protease from HIV-1 and Plasmepsin II from Plasmodium falciparum

Lindberg, J. (2004) · KTH Publication Database DiVA (KTH Royal Institute of Technology)

Desarrollo de vectores lentivirales para terapia génica del síndrome de Hiper-IgM ligado al cromosoma X (X-HIGM1)

Romero, Z. G. (2009) · Institutional Repository of the University of Granada (University of Granada)

Regional specificity of relroviral integration

Rynditch, A. V., Zoubak, S., Tsyba, L. O., Guley, N., Lazurkevitch, Z. V., & Bernardi, G. (1998) · Biopolymers and Cell · doi:10.7124/bc.0004da

Recent Progress in Understanding the Mechanism and Consequences of Retrotransposon Movement

Garfinkel, D. J., & Purzycka, K. J. (2017) · MDPI eBooks · doi:10.3390/books978-3-03842-541-0

Nucleosomes, DNA-binding proteins, and DNA sequence modulate retroviral integration target site selection

Pryciak, P. M., & Varmus, H. E. (1992) · Cell · doi:10.1016/0092-8674(92)90289-o · Cited by 273

Intasome architecture and chromatin density modulate retroviral integration into nucleosome

Benleulmi, M. S., Matysiak, J., Henriquez, D. R., Vaillant, C., Lesbats, P., Calmels, C., Naughtin, M., Leon, O., Skalka, A. M., Ruff, M., et al. (2015) · Retrovirology · doi:10.1186/s12977-015-0145-9 · Cited by 47

The influence of DNA and nucleosome structure on integration events directed by HIV integrase

Pruss, D., Reeves, R., Bushman, F. D., & Wolffe, A. P. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)31494-1 · Cited by 173

Retroviral integration into minichromosomes in vitro.

Pryciak, P. M., Sil, A., & VARMUS, H. E. (1992) · The EMBO Journal · doi:10.1002/j.1460-2075.1992.tb05052.x · Cited by 159

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Serrao, E., Ballandras-Colas, A., Cherepanov, P., Maertens, G. N., & Engelman, A. N. (2015) · Retrovirology · doi:10.1186/s12977-015-0167-3 · Cited by 62