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Catalysis by site-specific recombinases

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Formation and resolution of recombination intermediates by E. coliRecA and RuvC proteins

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Site-specific recombination intermediates trapped with suicide substrates

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Escherichia coli XerC recombinase is required for chromosomal segregation at cell division.

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xerB, an Escherichia coli gene required for plasmid ColE1 site‐specific recombination, is identical to pepA, encoding aminopeptidase A, a protein with substantial similarity to bovine lens leucine aminopeptidase.

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dif, a recA-independent recombination site in the terminus region of the chromosome of Escherichia coli.

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Evidence for a second conserved arginine residue in the integrase family of recombination proteins

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Recombination at ColE1 cer requires the Escherichia coli xerC gene product, a member of the lambda integrase family of site-specific recombinases

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The arginine repressor is essential for plasmid‐stabilizing site‐specific recombination at the ColE1 cer locus.

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Resolution of ColE1 dimers requires a DNA sequence implicated in the three‐dimensional organization of the cer site.

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Plasmid pSC101 harbors a recombination site, psi, which is able to resolve plasmid multimers and to substitute for the analogous chromosomal Escherichia coli site dif

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Isolation and characterization of intermediates in site-specific recombination.

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Xer site‐specific recombination in vitro.

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Site-specific recombination promoted by a short DNA segment of plasmid R1 and by a homologous segment in the terminus region of the Escherichia coli chromosome.

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Site‐specific recombination in the replication terminus region of Escherichia coli: functional replacement of dif.

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carP, Involved in Pyrimidine Regulation of theEscherichia coliCarbamoylphosphate Synthetase Operon Encodes a Sequence-specific DNA-binding Protein Identical to XerB and PepA, also Required for Resolution of ColEl Multimers

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Peptidase activity of Escherichia coli aminopeptidase A is not required for its role in Xer site‐specific recombination

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Maintenance of multicopy plasmid Clo DF13 in E. coli cells: Evidence for site-specific recombination at parB

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Derivatives of ColE1 cer show altered topological specificity in site‐specific recombination.

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Multicopy plasmid stability in Escherichia coli requires host-encoded functions that lead to plasmid site-specific recombination

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An intermediate in the phage λ site-specific recombination reaction is revealed by phosphorothioate substitution in DNA

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Mutant Escherichia coli arginine repressor proteins that fail to bind l ‐arginine, yet retain the ability to bind their normal DNA‐binding sites

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Ligation activity of FLP recombinase. The strand ligation activity of a site-specific recombinase using an activated DNA substrate.

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Effects of Holliday junction position on Xer‐mediated recombination in vitro.

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| Topological selectivity in site-specific recombination

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Holliday Intermediates and Reaction By-Products in FLP Protein-Promoted Site-Specific Recombination

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Characterization of Holliday Structures in FLP Protein-Promoted Site-Specific Recombination

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Catalysis by site-specific recombinases

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Similarities and differences among 105 members of the Int family of site-specific recombinases

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FtsK Is a DNA Motor Protein that Activates Chromosome Dimer Resolution by Switching the Catalytic State of the XerC and XerD Recombinases

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Transposition and site-specific recombination: adapting DNA cut-and-paste mechanisms to a variety of genetic rearrangements

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Crystal structure of the site‐specific recombinase, XerD

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The Tn7 transposase is a heteromeric complex in which DNA breakage and joining activities are distributed between different gene products.

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The Single-Stranded Genome of Phage CTX Is the Form Used for Integration into the Genome of Vibrio cholerae

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Timing, self‐control and a sense of direction are the secrets of multicopy plasmid stability

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X‐ray structure of aminopeptidase A from Escherichia coli and a model for the nucleoprotein complex in Xer site‐specific recombination

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Topological Selectivity in Xer Site-Specific Recombination

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FtsK‐dependent and ‐independent pathways of Xer site‐specific recombination

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Binding of the purified integron DNA integrase IntI1 to integron‐ and cassette‐associated recombination sites

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Cell division is required for resolution of dimer chromosomes at the dif locus of Escherichia coli

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Challenging a Paradigm: the Role of DNA Homology in Tyrosine Recombinase Reactions

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Xer Site Specific Recombination: Double and Single Recombinase Systems

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Reciprocal Control of Catalysis by the Tyrosine Recombinases XerC and XerD

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Xer Site-Specific Recombination: Promoting Vertical and Horizontal Transmission of Genetic Information

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Plasmid Diversity and Adaptation Analyzed by Massive Sequencing of Escherichia coli Plasmids

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The Escherichia coli DNA translocase FtsK

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Dissection of a functional interaction between the DNA translocase, FtsK, and the XerD recombinase

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Identification of novel tetracycline resistance gene tet (X14) and its co-occurrence with tet (X2) in a tigecycline-resistant and colistin-resistant Empedobacter stercoris

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The ArcA/ArcB two‐component regulatory system of Escherichia coli is essential for Xer site‐specific recombination at psi

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FtsK DNA Translocase: The Fast Motor That Knows Where It's Going

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Binding and cleavage of nicked substrates by site-specific recombinases XerC and XerD 1 1Edited by M. Yaniv

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Interplay between recombination, cell division and chromosome structure during chromosome dimer resolution in Escherichia coli

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DNA excision by the SfiI restriction endonuclease

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Tangle Analysis of Xer Recombination Reveals only Three Solutions, all Consistent with a Single Three-dimensional Topological Pathway

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Action of site‐specific recombinases XerC and XerD on tethered Holliday junctions

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The Order of Strand Exchanges in Cre-LoxP Recombination and its Basis Suggested by the Crystal Structure of a Cre-LoxP Holliday Junction Complex

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Norfloxacin‐induced DNA cleavage occurs at the dif resolvase locus in Escherichia coli and is the result of interaction with topoisomerase IV

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Surface Diversity in Mycoplasma agalactiae Is Driven by Site-Specific DNA Inversions within the vpma Multigene Locus

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The ripX Locus of Bacillus subtilis Encodes a Site-Specific Recombinase Involved in Proper Chromosome Partitioning

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Mutagenesis of PepA suggests a new model for the Xer/cer synaptic complex

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Xer Site‐Specific Recombination: Promoting Chromosome Segregation

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Xer Recombination in Escherichia coli

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Accessory factors determine the order of strand exchange in Xer recombination at psi

Bregu, M., Sherratt, D. J., & Colloms, S. D. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf379 · Cited by 44 · see citing works

Sequential Strand Exchange by XerC and XerD during Site-specific Recombination at dif

Blakely, G. W., Davidson, A. O., & Sherratt, D. J. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.14.9930 · Cited by 44 · see citing works

Genetic Mechanisms of Surface Variation

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Sequence of the loxP Site Determines the Order of Strand Exchange by the Cre Recombinase

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Insights into the architecture and stoichiometry of Escherichia coli PepA*DNA complexes involved in transcriptional control and site-specific DNA recombination by atomic force microscopy

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Are two better than one? Analysis of an FtsK/Xer recombination system that uses a single recombinase

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Whole genomic DNA sequencing and comparative genomic analysis of<i>Arthrospira platensis</i>: high genome plasticity and genetic diversity

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The Quiescent-Cell Expression System for Protein Synthesis in Escherichia coli

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Stability by multimer resolution of pJHCMW1 is due to the Tn1331 resolvase and not to the Escherichia coli Xer system The GenBank accession number for the sequence of the pJHCMW1 EcoRI–SacI fragment reported in this paper is AF135798.

Tolmasky, M. E., Colloms, S. D., Blakely, G., & Sherratt, D. J. (2000) · Microbiology · doi:10.1099/00221287-146-3-581 · Cited by 38 · see citing works

Mobilization of pdif modules in Acinetobacter: A novel mechanism for antibiotic resistance gene shuffling?

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Characterization of the Replication and Mobilization Regions of the MultiresistanceKlebsiella pneumoniaePlasmid pJHCMW1

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Recombinase binding specificity at the chromosome dimer resolution site dif of Escherichia coli 1 1Edited by I. B. Holland

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The topology of plasmid-monomerizing Xer site-specific recombination

Colloms, S. D. (2013) · Biochemical Society Transactions · doi:10.1042/bst20120340 · Cited by 37 · see citing works

Nucleoprotein architecture and ColE1 dimer resolution: a hypothesis

Hodgman, C. T., Griffiths, H., & Summers, D. (1998) · Molecular Microbiology · doi:10.1046/j.1365-2958.1998.00948.x · Cited by 36 · see citing works

Sense and nonsense from a systems biology approach to microbial recombinant protein production

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Control of Cre recombination by regulatory elements from Xer recombination systems

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Directional Resolution of Synthetic Holliday Structures by the Cre Recombinase

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Structure-function correlations in the XerD site-specific recombinase revealed by pentapeptide scanning mutagenesis

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Characterization of a conjugative transposon integrase, IntDOT

Malanowska, K., Salyers, A. A., & Gardner, J. F. (2006) · Molecular Microbiology · doi:10.1111/j.1365-2958.2006.05164.x · Cited by 30 · see citing works

Topology of Xer Recombination on Catenanes Produced by Lambda Integrase

Bath, J., Sherratt, D. J., & Colloms, S. D. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1999.2804 · Cited by 30 · see citing works

DNA binding of Escherichia coli arginine repressor mutants altered in oligomeric state

Chen, S., Merican, A. F., & Sherratt, D. J. (1997) · Molecular Microbiology · doi:10.1046/j.1365-2958.1997.4301791.x · Cited by 30 · see citing works

Site‐specific recombination at dif by Haemophilus influenzae XerC

Neilson, L., Blakely, G., & Sherratt, D. J. (1999) · Molecular Microbiology · doi:10.1046/j.1365-2958.1999.01231.x · Cited by 30 · see citing works

Transcription regulation in thermophilic Bacteria: high resolution contact probing of Bacillus stearothermophilus and Thermotoga neapolitana arginine repressor-operator interactions

Song, H., Wang, H., Gigot, D., Dimova, D., Sakanyan, V. A., Glansdorff, N., & Charlier, D. (2002) · Journal of Molecular Biology · doi:10.1006/jmbi.2001.5236 · Cited by 26 · see citing works

Functional Analysis of the Acinetobacter baumannii XerC and XerD Site-Specific Recombinases: Potential Role in Dissemination of Resistance Genes

Lin, D. L., Traglia, G. M., Baker, R., Sherratt, D. J., Ramirez, M. S., & Tolmasky, M. E. (2020) · Antibiotics · doi:10.3390/antibiotics9070405 · Cited by 25 · see citing works

Effect of DNA topology on holliday junction resolution by Escherichia coli RuvC and bacteriophage T7 endonuclease I

Zerbib, D., Colloms, S. D., Sherratt, D. J., & West, S. C. (1997) · Journal of Molecular Biology · doi:10.1006/jmbi.1997.1157 · Cited by 25 · see citing works

C‐terminal interactions between the XerC and XerD site‐specific recombinases

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Psoralen Cross-Linking as Probe of Torsional Tension and Topological Domain Sizein Vivo

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Mutational analysis of the thermostable arginine repressor from Bacillus stearothermophilus: dissecting residues involved in DNA binding properties

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A pot‐pourri of plasmid paradoxes: effects of a second copy

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DNA sequence of recombinase‐binding sites can determine Xer site‐specific recombination outcome

Blake, J. A. R., Ganguly, N., & Sherratt, D. J. (1997) · Molecular Microbiology · doi:10.1046/j.1365-2958.1997.2261600.x · Cited by 21 · see citing works

Cointegrate-resolution of toluene-catabolic transposon Tn4651: Determination of crossover site and the segment required for full resolution activity

Yano, H., Genka, H., Ohtsubo, Y., Nagata, Y., Top, E. M., & Tsuda, M. (2012) · Plasmid · doi:10.1016/j.plasmid.2012.07.004 · Cited by 20 · see citing works

SeqA structures behind Escherichia coli replication forks affect replication elongation and restart mechanisms

Pedersen, I. B., Helgesen, E., Flåtten, I., Fossum‐Raunehaug, S., & Skarstad, K. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx263 · Cited by 20 · see citing works

Relating primary structure to function in the Escherichia coli XerD site‐specific recombinase

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Strand Selection by the Tyrosine Recombinases

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Osmoregulation of Dimer Resolution at the Plasmid pJHCMW1 mwr Locus by Escherichia coli XerCD Recombination

Pham, H., Dery, K. J., Sherratt, D. J., & Tolmasky, M. E. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.6.1607-1616.2002 · Cited by 19 · see citing works

DNA Site-Specific Resolution Systems

Hallet, B., Vanhooff, V., & Cornet, F. (2014) · ASM Press eBooks · doi:10.1128/9781555817732.ch7 · Cited by 19 · see citing works

A New ColE1-like Plasmid Group Revealed by Comparative Analysis of the Replication Proficient Fragments of Vibrionaceae Plasmids

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Differences in Resolution of mwr -Containing Plasmid Dimers Mediated by the Klebsiella pneumoniae and Escherichia coli XerC Recombinases: Potential Implications in Dissemination of Antibiotic Resistance Genes

Bui, D., Ramiscal, J. A. B., Trigueros, S., Newmark, J., Do, A., Sherratt, D. J., & Tolmasky, M. E. (2006) · Journal of Bacteriology · doi:10.1128/jb.188.8.2812-2820.2006 · Cited by 19 · see citing works

Switching catalytic activity in the XerCD site-specific recombination machine 1 1Edited by J. Karn

Ferreira, H., Sherratt, D. J., & Arciszewska, L. K. (2001) · Journal of Molecular Biology · doi:10.1006/jmbi.2001.4940 · Cited by 19 · see citing works

Gene Acquisition in Bacteria by Integron‐Mediated Site‐Specific Recombination

Recchia, G. D., & Sherratt, D. J. (2007) · doi:10.1128/9781555817954.ch9 · Cited by 19 · see citing works

Quantifying complexity in DNA structures with high resolution Atomic Force Microscopy

Holmes, E. P., Gamill, M. C., Provan, J. I., Wiggins, L., Rusková, R., Whittle, S., Catley, T. E., Main, K. H. S., Shephard, N., Bryant, H. E., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-60559-x · Cited by 18 · see citing works

Holliday junction affinity of the base excision repair factor Endo III contributes to cholera toxin phage integration

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Homology-dependent interactions determine the order of strand exchange by IntDOT recombinase

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Holliday junction formation by the Borrelia burgdorferi telomere resolvase, ResT: implications for the origin of genome linearity

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ArgR and PepA, accessory proteins for XerCD-mediated resolution of ColE1 dimers, are also required for stable maintenance of the P1 prophage

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Comparison of the structure–activity relationships of the integron-associated recombination sites attI3 and attI1 reveals common features

Collis, C. M., & Hall, R. M. (2004) · Microbiology · doi:10.1099/mic.0.26596-0 · Cited by 18 · see citing works

Simple topology: FtsK-directed recombination at the dif site

Grainge, I. (2013) · Biochemical Society Transactions · doi:10.1042/bst20120299 · Cited by 17 · see citing works

Functional Analysis of the C-terminal Domains of the Site-specific Recombinases XerC and XerD

Ferreira, H., Butler-Cole, B. F. C., Burgin, A. B., Baker, R., Sherratt, D. J., & Arciszewska, L. K. (2003) · Journal of Molecular Biology · doi:10.1016/s0022-2836(03)00558-8 · Cited by 15 · see citing works

Site-specific recombination and circular chromosome segregation

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Xer‐mediated site‐specific recombination at cer generates Holliday junctions in vivo.

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Analysis of xer site-specific recombination in vivo

McCulloch, R. (1992) · Enlighten: Theses (The University of Glasgow)

Sequential Strand Exchange by XerC and XerD during Site-specific Recombination at dif

Blakely, G. W., Davidson, A. O., & Sherratt, D. J. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.14.9930 · Cited by 44 · see citing works

Direct interaction of aminopeptidase A with recombination site DNA in Xer site‐specific recombination

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