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PcoB is a defense outer membrane protein that facilitates cellular uptake of copper
Open accessPublished version of a preprint
Abstract
Copper (Cu) is one of the most abundant trace metals in all organisms, involved in a plethora of cellular processes. Yet elevated concentrations of the element are harmful, and interestingly prokaryotes are more sensitive for environmental Cu stress than humans. Various transport systems are present to maintain intracellular Cu homeostasis, including the prokaryotic plasmid‐encoded multiprotein pco operon, which is generally assigned as a defense mechanism against elevated Cu concentrations. Here we structurally and functionally characterize the outer membrane component of the Pco system, PcoB, recovering a 2.0 Å structure, revealing a classical β‐barrel architecture. Unexpectedly, we identify a large opening on the extracellular side, linked to a considerably electronegative funnel that becomes narrower towards the periplasm, defining an ion‐conducting pathway as also supported by metal binding quantification via inductively coupled plasma mass spectrometry and molecular dynamics (MD) simulations. However, the structure is partially obstructed towards the periplasmic side, and yet flux is permitted in the presence of a Cu gradient as shown by functional characterization in vitro. Complementary in vivo experiments demonstrate that isolated PcoB confers increased sensitivity towards Cu. Aggregated, our findings indicate that PcoB serves to permit Cu import. Thus, it is possible the Pco system physiologically accumulates Cu in the periplasm as a part of an unorthodox defense mechanism against metal stress. These results point to a previously unrecognized principle of maintaining Cu homeostasis and may as such also assist in the understanding and in efforts towards combatting bacterial infections of Pco‐harboring pathogens.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Varadi, M., Anyango, S., Deshpande, M., Nair, S., Natassia, C., Yordanova, G., Yuan, D., Stroe, O., Wood, G., Laydon, A., et al. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkab1061 · Cited by 7,850
Copper tolerance and virulence in bacteria
Ladomersky, E., & Petris, M. J. (2015) · Metallomics · doi:10.1039/c4mt00327f · Cited by 280
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Research works printed but not linked: 57
- 10.1074/jbc.TM118.002255 · DOI
- 10.1039/c1mt00107h · DOI
- 10.1016/S0168-6445(03)00049-4 · DOI
- 10.1126/science.1085950 · DOI
- 10.1007/s10565-013-9262-1 · DOI
- 10.1038/s41589-018-0211-4 · DOI · Paper page
- 10.1073/pnas.97.2.652 · DOI
- 10.1073/pnas.052710499 · DOI
- 10.1016/B978-0-12-394390-3.00007-0 · DOI
- 10.1038/nature09395 · DOI
- 10.1021/bi102012j · DOI · Paper page
- 10.1111/j.1574-6968.2012.02529.x · DOI
- 10.1128/JB.182.20.5864-5871.2000 · DOI
- 10.1128/jb.154.3.1263-1268.1983 · DOI
- 10.2527/jas1985.602462x · DOI
- 10.1128/JB.01616-08 · DOI
- Rouch D, 1985, Inducible plasmid‐mediated copper resistance in Escherichia‐Coli, J Gen Microbiol, 131, 939
- 10.1111/j.1462-2920.2008.01720.x · DOI
- 10.1111/j.1365-2958.1995.mmi_17061153.x · DOI
- 10.1016/j.jinorgbio.2012.04.009 · DOI
- 10.1021/bi0259960 · DOI
- 10.1128/JB.00837-06 · DOI
- 10.1016/S0006-291X(02)00726-X · DOI
- Hernandez‐Montes G, 2012, Evolution and diversity of periplasmic proteins involved in copper homeostasis in gamma proteobacteria. Bmc, Microbiology, 12
- Lawaree E, 2016, Caulobacter crescentus intrinsic dimorphism provides a prompt bimodal response to copper stress. Nature, Microbiology, 1
- 10.1002/cbic.200800100 · DOI
- 10.1073/pnas.88.20.8915 · DOI
- 10.1371/journal.pone.0015610 · DOI
- 10.1016/S0005-2736(02)00577-1 · DOI
- 10.1038/401717a0 · DOI
- 10.1093/nar/gkw408 · DOI · Paper page
- 10.1021/ja00905a001 · DOI · Paper page
- 10.1016/j.cell.2020.03.037 · DOI · Paper page
- 10.1093/bioinformatics/bty862 · DOI
- 10.1371/journal.pbio.3000218 · DOI
- 10.1074/jbc.M117.804492 · DOI
- 10.1107/S0907444909047337 · DOI · Paper page
- 10.1107/S0907444909052925 · DOI · Paper page
- 10.1107/S090744490705024X · DOI · Paper page
- 10.1107/S0907444910007493 · DOI · Paper page
- 10.1107/S0907444912001308 · DOI · Paper page
- 10.1016/j.jallcom.2018.06.334 · DOI
- 10.1039/C4PP00097H · DOI
- 10.1038/ncomms7890 · DOI
- 10.1002/jcc.23702 · DOI
- 10.1002/jcc.20945 · DOI · Paper page
- 10.1016/j.bpj.2014.04.024 · DOI
- 10.1093/nar/gkr703 · DOI
- 10.1021/ct100578z · DOI
- 10.1016/j.softx.2015.06.001 · DOI · Paper page
- 10.1021/jp101759q · DOI
- 10.1021/ct300400x · DOI
- 10.1063/1.328693 · DOI
- 10.1080/00268978300102851 · DOI
- 10.1103/PhysRevA.31.1695 · DOI
- 10.1063/1.447334 · DOI
- 10.1021/jp054177x · DOI
Metadata
- Authors
- Li, P., Nayeri, N., Górecki, K., Becares, E. R., Wang, K., Mahato, D. R., Andersson, M., Abeyrathna, S. S., Lindkvist‐Petersson, K., Meloni, G., Missel, J. W., & Gourdon, P.
- Affiliations
- Lund University (SE)
- University of Copenhagen (DK)
- Umeå University (SE)
- The University of Texas at Dallas (US)
- Corresponding author
- Gourdon, Pontus
- ORCID
- Venue
- Protein Science
- Publisher
- Wiley
- Published
- 2022-06-21
- Volume
- 31
- Issue
- 7
- Pages
- e4364-e4364
- ISSN
- 0961-8368 (ISSN-L)
- 1469-896X
- PMC
- PMC9210255
- OpenAlex
- W4283208643
- Cited by
- 25
- References
- 3
- Citations by year
- 2026: 6 · 2025: 11 · 2024: 3 · 2023: 3 · 2022: 2
- FWCI
- 2.87
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Protein Science (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Research at the University of Copenhagen (University of Copenhagen) (publishedVersion, cc-by)
- DORA PSI (Paul Scherrer Institute) (submittedVersion, cc-by)
- Lund University Publications (Lund University) (submittedVersion)
- Funders
- Agnes og Poul Friis Fond
- Augustinus Fonden (16‐1992)
- Carl Tryggers Stiftelse för Vetenskaplig Forskning (CTS 17:22, CTS 21:1773)
- Carlsbergfondet (2013_01_0641, CF15‐0542)
- Crafoordska Stiftelsen (20170818, 20180652, 20200739)
- DanScatt
- Danmarks Frie Forskningsfond (4183‐00559, 6108‐00479, 9039‐00273)
- Hartmann Fonden (A29519)
- Knut och Alice Wallenbergs Stiftelse (2015.0131, 2020.0194)
- Lundbeckfonden (R133‐A12689, R313‐2019‐774)
- National Institute of General Medical Sciences (R35GM128704)
- Novo Nordisk Fonden (NNF13OC0007471)
- Vera og Carl Johan Michaelsens Legat
- Vetenskapsrådet (2016‐04474, 2020‐03840, 521‐2012‐2243)
- Welch Foundation (AT‐1935‐20170325, AT‐2073‐20210327)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Health Sciences › Medicine › Oncology › Drug Transport and Resistance Mechanisms
- Health Sciences › Nursing › Nutrition and Dietetics › Trace Elements in Health
- Keywords
- copper transport, copper homeostasis, outer membrane proteins, beta-barrel protein structure, copper imports, metal ion binding
- MeSH terms
- Biological Transport, Copper, Homeostasis, Humans, Membrane Proteins, Periplasm
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