Incorrect Analysis of MCAM Gene Promoter Methylation in Prostate Cancer
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Independent studies have reported that the identities of some nucleotide sequence reagents do not match their descriptions.
“Independent studies have described examples where the identities of some nucleotide sequence reagents do not match their descriptions (5–17), including oligonucleotide probes on microarrays (18, 19), and shRNAs in libraries (20).”
From Misspellings or “miscellings”—Non‐verifiable and unknown cell lines in cancer research publications (2024) · cites this paper as [8]
Many studies indicate that experimental reagents can be wrongly identified in publications.
“many studies now indicate that experimental reagents can be wrongly identified in publications”
From Misspellings or “miscellings”—Non‐verifiable and unknown cell lines in cancer research publications (2024) · cites this paper as [8]
Cites
DNA methylation patterns and epigenetic memory
Bird, A. (2002) · Genes & Development · doi:10.1101/gad.947102 · Cited by 7,124 · see citing works
The fundamental role of epigenetic events in cancer
Jones, P. A., & Baylin, S. B. (2002) · Nature Reviews Genetics · doi:10.1038/nrg816 · Cited by 5,648 · see citing works
Gene Silencing in Cancer in Association with Promoter Hypermethylation
Herman, J. G., & Baylin, S. B. (2003) · New England Journal of Medicine · doi:10.1056/nejmra023075 · Cited by 3,414 · see citing works
DNA methylation and human disease
Robertson, K. D. (2005) · Nature Reviews Genetics · doi:10.1038/nrg1655 · Cited by 2,864 · see citing works
MethPrimer: designing primers for methylation PCRs
Li, L.-C., & Dahiya, R. (2002) · Bioinformatics · doi:10.1093/bioinformatics/18.11.1427 · Cited by 2,741 · see citing works
Analysis of Promoter CpG Island Hypermethylation in Cancer: Location, Location, Location!
van Vlodrop, I. J. H., Niessen, H. E. C., Derks, S., Baldewijns, M. M. L. L., Criekinge, W. V., Herman, J. G., & van Engeland, M. (2011) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-10-3394 · Cited by 144 · see citing works
Vasiljeviš, N., Wu, K., Brentnall, A. R., Kim, D. C., Thorat, M. A., Kudahetti, S. C., Mao, X., Xue, L., Yu, Y., Shaw, G. L., et al. (2011) · Disease Markers · doi:10.1155/2011/157829 · Cited by 79 · see citing works
Vasiljević, N., Wu, K., Brentnall, A. R., et al. (2011) · PubMed · doi:10.3233/dma-2011-0790 · Cited by 76 · see citing works
Hypermethylation of MCAM gene is associated with advanced tumor stage in prostate cancer
Liu, J., Nagpal, J. K., Jerónimo, C., Lee, J., Henrique, R., Kim, M. S., Ostrow, K. L., Yamashita, K., Criekinge, W. V., Wu, G., et al. (2008) · The Prostate · doi:10.1002/pros.20709 · Cited by 43 · see citing works
Identification of the Elements Regulating the Expression of the Cell Adhesion Molecule MCAM/MUC18
Mintz-Weber, C. S., & Johnson, J. P. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m003812200 · Cited by 36 · see citing works
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Identification of human gene research articles with wrongly identified nucleotide sequences
Park, Y., West, R. A., Pathmendra, P., Favier, B., Stoeger, T., Capes-Davis, A., Cabanac, G., Labbé, C., & Byrne, J. A. (2022) · Life Science Alliance · doi:10.26508/lsa.202101203 · Cited by 37 · see citing works
“These error types represent the equivalent of spelling errors (12, 14, 15), as well as identity errors, where a correct sequence is replaced by a different and possibly genetically unrelated sequence (11, 12, 13, 16, 17, 18, 19, 20, 21).”
Byrne, J. A., Park, Y., West, R. A., Capes-Davis, A., Favier, B., Cabanac, G., & Labbé, C. (2021) · Scientometrics · doi:10.1007/s11192-021-03871-9 · Cited by 21 · see citing works
Misspellings or “miscellings”—Non‐verifiable and unknown cell lines in cancer research publications
Oste, D. J., Pathmendra, P., Richardson, R. A. K., Johnson, G., Ao, Y., Arya, M. D., Enochs, N. R., Hussein, M., Kang, J., Lee, A., et al. (2024) · International Journal of Cancer · doi:10.1002/ijc.34995 · Cited by 18 · see citing works
- Authors
- Kocemba, K. A., Dudzik, P., Ostrowska, B., & Laidler, P.
- Affiliations
- Chair of Medical Biochemistry; Jagiellonian University Medical College; Kraków Poland
- Jagiellonian University (PL)
- Venue
- The Prostate
- Publisher
- Wiley
- Published
- 2016-07-15
- Volume
- 76
- Issue
- 15
- Pages
- 1464-1465
- ISSN
- 0270-4137 (ISSN-L)
- OpenAlex
- W2518440824
- Cited by
- 6
- References
- 10
- Citations by year
- 2024: 1 · 2022: 1 · 2021: 2 · 2019: 2
- Type
- journal article
- Language
- en
- Open access
- green
- ruj.uj.edu.pl
- Licence
- cc-by-nc-nd
- doi.wiley.com/10.1002/tdm_license_1.1 (tdm)
- Locations
- The Prostate (publishedVersion)
- PubMed (publishedVersion)
- Jagiellonian University Repository (Jagiellonian University) (submittedVersion, cc-by-nc-nd)
- Homo Politicus (Academy of Humanities and Economics in Lodz) (submittedVersion, cc-by-nc-nd)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Prostate Cancer Treatment and Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Cancer-related gene regulation
- Keywords
- promoter methylation, prostate cancer, DNA methylation analysis, epigenetics
- MeSH terms
- Humans, Male, Promoter Regions, Genetic, Prostatic Neoplasms, DNA Methylation
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