CAPRI: A Critical Assessment of PRedicted Interactions

Janin, Joël, Henrick, Kim, Moult, John, Eyck, Lynn Ten, Sternberg, Michael J. E., Vajda, Sandor, Vakser, Ilya, Wodak, Shoshana J.·2003·Proteins: Structure, Function, and Bioinformatics

DOI 10.1002/prot.10381

Cited by (705)

Items 401–500 of 705

Guiding automated NMR structure determination using a global optimization metric, the NMR DP score
Yuanpeng Janet Huang, Binchen Mao, Fei Xu, Gaetano Thomas Montelione · 2015 · Journal of Biomolecular NMR
New Strategies for Integrative Dynamic Modeling of Macromolecular Assembly
Enrico Spiga, Matteo T. Degiacomi, Matteo Dal Peraro · 2014 · Advances in protein chemistry and structural biology
Structure determination of protein-peptide complexes from NMR chemical shift data using MELD
Arup Mondal, G.V.T. Swapna, Jingzhou Hao, Li-Chung Ma, Monica J. Roth, Gaetano Thomas Montelione, Alberto Pérez · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
Comprehensive Evaluation of AlphaFold-Multimer, AlphaFold3 and ColabFold, and Scoring Functions in Predicting Protein-Peptide Complex Structures
Negin Manshour, Jarett Zida Ren, Farzaneh Esmaili, Erik Bergstrom, Dong He Xu · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Correctness and accuracy of template-based modeled single chain fragment variable (scFv) protein anti-breast cancer cell line (MCF-7)
Elham Omer Mahgoub, Ahmed Kamal Bolad · 2013 · Open Journal of Genetics
Benchmarking of structure refinement methods for protein complex models
Jacob C. Verburgt, Daisuke Kihara · 2021 · Proteins Structure Function and Bioinformatics
Inhibition constant and stability of tripeptide inhibitors of gut trypsin‐like enzyme of the soybean pest Anticarsia gemmatalis
Rafael de Almeida Barros, Yaremis Meriño‐Cabrera, José Severiche Castro, Neilier Junior, Halina Schultz, Rafael Júnior de Andrade, João Vitor Aguilar de Oliveira, Humberto Josué de Oliveira Ramos, Maria Goreti de Almeida Oliveira · 2022 · Archives of Insect Biochemistry and Physiology
An Ensemble Docking Approach for Analyzing and Designing Aptamer Heterodimers Targeting VEGF165
Yeon Ju Go, Mahroof Kalathingal, Young Min Rhee · 2024 · International Journal of Molecular Sciences
Probabilistic Models for Capturing More Physicochemical Properties on Protein–Protein Interface
Fei Guo, Shuai Cheng Li, Pu-Feng Du, Lusheng Wang · 2014 · Journal of Chemical Information and Modeling
Protein–protein interface prediction based on hexagon structure similarity
Fei Guo, Yijie Ding, Shuai Cheng Li, Chao Shen, Lusheng Wang · 2016 · Computational Biology and Chemistry
Computational structural enzymology methodologies for the study and engineering of fatty acid synthases, polyketide synthases and nonribosomal peptide synthetases
Andrew J. Schaub, Gabriel O. Moreno, Shiji Zhao, Hau V. Truong, Ray Luo, Shiou‐Chuan Tsai · 2019 · Methods in enzymology on CD-ROM/Methods in enzymology
From complete cross-docking to partners identification and binding sites predictions
Chloé Dequeker, Yasser Mohseni Behbahani, Laurent David, Élodie Laine, Alessandra Carbone · 2022 · PLoS Computational Biology
Feature‐based classification of native and non‐native protein–protein interactions: Comparing supervised and semi‐supervised learning approaches
Nan Zhao, Bin Pang, Chi‐Ren Shyu, Dmitry Korkin · 2011 · PROTEOMICS
Comparing side chain packing in soluble proteins, protein‐protein interfaces, and transmembrane proteins
Jennifer C. Gaines, S. Acebes, Alejandro Virrueta, Mitchell P. Butler, Lynne Regan, Corey S. O’Hern · 2018 · Proteins Structure Function and Bioinformatics
PTMdyna: exploring the influence of post-translation modifications on protein conformational dynamics
Xing-Xing Shi, Zhi-Zheng Wang, Yuliang Wang, Guang-Yi Huang, Jing‐Fang Yang, Fan Wang, Ge‐Fei Hao, Guang‐Fu Yang · 2021 · Briefings in Bioinformatics
Modulating tenascin-C functions by targeting the MAtrix REgulating MOtif, “MAREMO”
Thomas Loustau, Chérine Abou Fayçal, William Erne, Pia Abel zur Wiesch, Ayoub Ksouri, Thomas Imhof, Matthias Mörgelin, Chengbei Li, Malaurie Mathieu, Nathalie Salomé et al. · 2022 · Matrix Biology
High Performance 3D Convolution for Protein Docking on IBM Blue Gene
Akira Nukada, Yuichiro Hourai, Akira Nishida, Yutaka Akiyama · 2007 · Lecture notes in computer science
SOFTDOCK application to protein–protein interaction benchmark and CAPRI
Nan Li, Zhonghua Sun, Fan Jiang · 2007 · Proteins Structure Function and Bioinformatics
Progress and Bottlenecks for Deep Learning in Computational Structure Biology: CASP Round XVI
Andriy Kryshtafovych, Torsten F. Schwede, Maya Topf, Krzysztof A. Fidelis, John Moult · 2025 · Proteins Structure Function and Bioinformatics
Fundamentals of Molecular Docking and Comparative Analysis of Protein–Small-Molecule Docking Approaches
Sefika Feyza Maden, Selin Sezer, Saliha Ece Acuner · 2022 · Biomedical engineering
Deep learning in modeling protein complex structures: From contact prediction to end-to-end approaches
Peicong Lin, Hao Li, Sheng‐You Huang · 2024 · Current Opinion in Structural Biology
Recent advances and challenges in protein complex model accuracy estimation
Fang Liang, Meng Sun, Lei Xie, Xuanfeng Zhao, Dong Liu, Kailong Zhao, Guijun Zhang · 2024 · Computational and Structural Biotechnology Journal
PepBinding: A Workflow for Predicting Peptide Binding Structures by Combining Peptide Docking and Peptide Gaussian Accelerated Molecular Dynamics Simulations
Jinan Wang, Kushal Koirala, Hung Nguyen Do, Yinglong Miao · 2024 · The Journal of Physical Chemistry B
Docking-calculation-based method for predicting protein-RNA interactions.
Masahito Ohue, Yuri Matsuzaki, Yutaka Akiyama · 2011 · PubMed
Performance of human and server prediction in CAPRI rounds 38‐45
Rui Duan, Liming Qiu, Xianjin Xu, Zhiwei Ma, Benjamin Ryan Merideth, Chi‐Ren Shyu, Xiaoqin Zou · 2020 · Proteins Structure Function and Bioinformatics
Structural Similarity and Classification of Protein Interaction Interfaces
Nan Zhao, Bin Pang, Chi‐Ren Shyu, Dmitry Korkin · 2011 · PLoS ONE
Prediction of Biomolecular Complexes
Anna Vangone, Romina Oliva, Luigi Cavallo, Alexandre M. J. J. Bonvin · 2017 · Springer eBooks
A Practical Guide to iSPOT Modeling: An Integrative Structural Biology Platform
An H. Hsieh, Lanyuan Lu, Mark R. Chance, Sichun Yang · 2017 · Advances in experimental medicine and biology
Topology-independent and global protein structure alignment through an FFT-based algorithm
Zeyu Wen, Jiahua He, Sheng‐You Huang · 2019 · Bioinformatics
Interface Analysis of the Complex between ERK2 and PTP-SL
Mihaela C. Balasu, Laurentiu N. Spiridon, Simona M. Miron, Constantin T. Craescu, Axel J. Scheidig, Andrei‐José Petrescu, Stefan Eugen Szedlacsek · 2009 · PLoS ONE
MTMDAT-HADDOCK: High-throughput, protein complex structure modeling based on limited proteolysis and mass spectrometry
Janosch Hennig, Sjoerd J. de Vries, Klaus Dm Hennig, Leah Randles, Kylie J. Walters, Maria Sunnerhagen, Alexandre M. J. J. Bonvin · 2012 · BMC Structural Biology
Incorporating receptor flexibility in the molecular design of protein interfaces
Liwei Li, Shide Liang, Meaghan M. Pilcher, Samy O. Meroueh · 2009 · Protein Engineering Design and Selection
ZEPPI: Proteome-scale sequence-based evaluation of protein–protein interaction models
Haiqing Zhao, Donald S. Petrey, Diana Murray, Barry H. Honig · 2024 · Proceedings of the National Academy of Sciences
Advances and Challenges in Scoring Functions for RNA–Protein Complex Structure Prediction
Chengwei Zeng, Zhuo Chen, Jiaming Gao, Haoquan Liu, Yunjie Zhao · 2024 · Biomolecules
A comprehensive primer and review of PROTACs and their In Silico design
Jacopo Zattoni, Paola Vottero, Gea Carena, Chiara Uliveto, Giulia Pozzati, Benedetta Morabito, Ebenezea Gitari, Jack A. Tuszyński, Maral Aminpour · 2025 · Computer Methods and Programs in Biomedicine
Protein-protein structure prediction by scoring molecular dynamics trajectories of putative poses
Edoardo Sarti, Ivan Gladich, Stefano Zamuner, Bruno E. Correia, Alessandro Laio · 2016 · Proteins Structure Function and Bioinformatics
Implications of Molecular Docking Assay for Bioremediation
Zarrin Basharat, Monazza Bibi, Azra Yasmin · 2017 · Advances in environmental engineering and green technologies book series
Protein-protein interaction encoded as an exposure of hydrophobic residues on the surface
Mateusz Banach, Leszek Konieczny, Irena Roterman · 2019 · Elsevier eBooks
Template‐based modeling and ab‐initio docking using CoDock in CAPRI
Ren Kong, Ran‐Ran Liu, Ximing Xu, Dawei Zhang, Xiaoshuang Xu, Hang Shi, Shan Chang · 2020 · Proteins Structure Function and Bioinformatics
CryoFold 2.0: Cryo-EM Structure Determination with MELD
Liwei Chang, Arup Mondal, Justin L. MacCallum, Alberto Pérez · 2023 · The Journal of Physical Chemistry A
RRDB: a comprehensive and non-redundant benchmark for RNA–RNA docking and scoring
Yumeng Yan, Sheng‐You Huang · 2017 · Bioinformatics
Assessing the binding properties of <scp>CASP14</scp> targets and models
Egbert, Megan, Ghani, Usman, Ashizawa, Ryota, Kotelnikov, Sergei, Nguyen, Thu, Desta, Israel, Hashemi, Nasser, Padhorny, Dzmitry, Kozakov, Dima, Vajda, Sandor · 2021 · Proteins: Structure, Function, and Bioinformatics
Validation and analysis of 12,000 AI-driven CAR-T designs in the Bits to Binders competition
Clayton W. Kosonocky, Alex M. Abel, Aaron L. Feller, Amanda Cifuentes Rieffer, Phillip R. Woolley, Jakub Lála, Delbert S. Barth, Tynan Gardner, Bits to Binders Competitors, Daniel Acosta et al. · 2026 · Molecular Systems Biology
RosettaHDX: Predicting antibody-antigen interaction from hydrogen-deuterium exchange mass spectrometry data
Minh H. Tran, Cristina E. Martina, Rocco Moretti, Marcus Nagel, Kevin L. Schey, Jens Meiler · 2025 · Journal of Structural Biology
A fully automated benchmarking suite to compare macromolecular complexes
Studer, Gabriel, Robin, Xavier, Bienert, Stefan, Durairaj, Janani, Škrinjar, Peter, Tauriello, Gerardo, Waterhouse, Andrew Mark, Schwede, Torsten · 2026 · Nature Methods
Prediction of Protein-Protein Binding Interfaces
Damian Marchewka, Wiktor Jurkowski, Mateusz Banach, Irena Roterman‐Konieczna · 2012 · Focus on structural biology
Protein–protein docking with interface residue restraints*
Hao Li, Sheng‐You Huang · 2020 · Chinese Physics B
Structural Analysis of Large Protein Complexes Using Solvent Paramagnetic Relaxation Enhancements
Tobias Madl, Thomas Guettler, Dirk Görlich, Michael Sattler · 2011 · Angewandte Chemie
Simultaneous Prediction of Interaction Sites on the Protein and Peptide Sides of Complexes through Multilayer Graph Convolutional Networks
Kailong Li, Lijun Quan, Yelu Jiang, Hongjie Wu, Jian Wu, Yan Li, Yiting Zhou, Tingfang Wu, Qiang Lyu · 2023 · Journal of Chemical Information and Modeling
The 2006 Automated Function Prediction Meeting
Ana PC Rodrigues, Barry J. Grant, Adam Godzik, Iddo Friedberg · 2007 · BMC Bioinformatics
GOstruct 2.0
Indika Kahanda, Asa Ben‐Hur · 2017 · ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB)
Development of a New Benchmark for Assessing the Scoring Functions Applicable to Protein–Protein Interactions
Li Han, Qifan Yang, Zhihai Liu, Yan Li, Renxiao Wang · 2018 · Future Medicinal Chemistry
Targeting the glycan of receptor binding domain with jacalin as a novel approach to develop a treatment against COVID-19
Senthilnathan Rajendran, Arunchalam Jothi, Anbazhagan Veerappan · 2020 · Royal Society Open Science
Challenges and Advantages of Accounting for Backbone Flexibility in Prediction of Protein–Protein Complexes
Nabil F. Faruk, Xiangda Peng, Karl F. Freed, Benoı̂t Roux, Tobin R. Sosnick · 2022 · Journal of Chemical Theory and Computation
How to Use Not-Always-Reliable Binding Site Information in Protein-Protein Docking Prediction
Lin Li, Yanzhao Huang, Yi Xiao · 2013 · PLoS ONE
A protein‐specifically adapted scoring function for the reranking of docking solutions
Wolfgang Müller, Heinrich Sticht · 2007 · Proteins Structure Function and Bioinformatics
PSOPIA: Toward more reliable protein-protein interaction prediction from sequence information
Yoichi Murakami, Kenji Mizuguchi · 2017 · International Conference on Intelligent Informatics and Biomedical Sciences (ICIIBMS)
A comparison of SCOP and CATH with respect to domain–domain interactions
Emily Jefferson, Thomas P. Walsh, Geoffrey J. Barton · 2007 · Proteins Structure Function and Bioinformatics
DeepInterface: Protein-protein interface validation using 3D Convolutional Neural Networks
A.T. Balci, Can Gümeli, Asma Hakouz, Deniz Yüret, Özlem Keskin, Attila Gürsoy · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
UDock2: interactive real-time multi-body protein–protein docking software
Cyprien Plateau–Holleville, Simon Guionnière, Benjamin Boyer, Brian Jiménez‐García, Guillaume Levieux, Stéphane Mérillou, Maxime Maria, Matthieu Montès · 2023 · Bioinformatics
Evaluation of DNA–protein complex structures using the deep learning method
Chengwei Zeng, Yiren Jian, Zhuo Chen, Anbang Li, Chen Zeng, Yunjie Zhao · 2023 · Physical Chemistry Chemical Physics
What does it take for an ‘AlphaFold Moment’ in functional protein engineering and design?
Roberto A. Chica, Noelia Ferruz · 2024 · Nature Biotechnology
Focused grid‐based resampling for protein docking and mapping
Artem B. Mamonov, Mohammad Moghadasi, Hanieh Mirzaei, Shahrooz Zarbafian, Laurie E. Grove, Tanggis Bohnuud, Pirooz Vakili, Ioannis Ch. Paschalidis, Sándor Vajda, Dima Kozakov · 2016 · Journal of Computational Chemistry
Docking proteins and peptides under evolutionary constraints in Critical Assessment of PRediction of Interactions rounds 38 to 45
Aravindan Arun Nadaradjane, Chloé Quignot, Seydou Traoré, Jessica Andréani, Raphaël Guérois · 2019 · Proteins Structure Function and Bioinformatics
Study of Recombinant Antibody Fragments and PAI-1 Complexes Combining Protein-Protein Docking and Results from Site-Directed Mutagenesis
Héctor Novoa de Armas, Maarten Dewilde, Koen Verbeke, Marc De Maeyer, Paul J. Declerck · 2007 · Structure
Protein docking with predicted constraints
Ludwig Krippahl, Pedro Barahona · 2015 · Algorithms for Molecular Biology
Refinement of unbound protein docking studies using biological knowledge
Philipp Heuser, Davide Baù, Pascal Benkert, Dietmar Schomburg · 2005 · Proteins Structure Function and Bioinformatics
Structural Context of Exons in Protein Domains: Implications for Protein Modelling and Design
Bruno Contreras‐Moreira, Pall F. Jonsson, Paul A. Bates · 2003 · Journal of Molecular Biology
Protein–protein docking: Progress in CAPRI rounds 6–12 using a combination of methods: The introduction of steered solvated molecular dynamics
Alexander Heifetz, Sandeep Pal, Graham R. Smith · 2007 · Proteins Structure Function and Bioinformatics
ProInterVal: Validation of Protein–Protein Interfaces through Learned Interface Representations
Ovek, Damla, Keskin, Ozlem, Gursoy, Attila · 2024 · Journal of Chemical Information and Modeling
Strengths and limitations of web servers for the modeling of TCRpMHC complexes
Hoa Nhu Le, Martiela Vaz de Freitas, Dinler A. Antunes · 2024 · Computational and Structural Biotechnology Journal
Molecular Docking - Recent Advances
Erman Salih Istıflı · 2022 · Biomedical engineering
Computational investigation of mechanistic insights of Aβ42 interactions against extracellular domain of nAChRα7 in Alzheimer’s disease
Mubashir Hassan, Saba Shahzadi, Hussain Raza, Muhammad Athar Abbasi, Hany Alashwal, Nazar Zaki, Ahmed A. Moustafa, Sung‐Yum Seo · 2018 · International Journal of Neuroscience
Scoring of protein–protein docking models utilizing predicted interface residues
Gabriele Pozzati, Petras J. Kundrotas, Arne Elofsson · 2022 · Proteins Structure Function and Bioinformatics
Potential of Epidermal Growth Factor-like Peptide from the Sea Cucumber Stichopus horrens to Increase the Growth of Human Cells: In Silico Molecular Docking Approach
Nur Shazwani Mohd Pilus, Azira Muhamad, Muhammad Ashraf Shahidan, Nurul Yuziana Mohd Yusof · 2022 · Marine Drugs
Predictive Modeling and Structure Analysis of Genetic Variants in Familial Hypercholesterolemia: Implications for Diagnosis and Protein Interaction Studies
A. Larrea, Shifa Jebari‐Benslaiman, Unai Galicia García, Ane San Jose- Urteaga, Kepa B. Uribe, Asier Benito‐Vicente, César Martı́n · 2023 · Current Atherosclerosis Reports
A structural perspective on protein?protein interactions
R RUSSELL · 2004 · Current Opinion in Structural Biology
Structural Plausibility Without Binding Specificity: Limits of AI-Based Antibody-Antigen Structure Prediction Confidence Scores
Eva Smorodina, Montader Ali, Klara Kropivšek, Leonardo Salicari, Samo Miklavc, Aibek Kappassov, Chengcheng Fu, Pietro Sormanni, Ario de Marco, Victor Greiff · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
Integrative Modeling in the Age of Machine Learning: A Summary of HADDOCK Strategies in CAPRI Rounds 47–55
Victor Reys, Marco Giulini, Vlad Cojocaru, Anna Engel, Xiaotong Xu, Jorge Roel‐Touris, Cunliang Geng, Francesco Ambrosetti, Brian Jiménez‐García, Zuzana Jandová et al. · 2024 · Proteins Structure Function and Bioinformatics
Biomolecular Interaction Prediction in the Pre‐ and Post‐ AlphaFold Era: The 8th CAPRI Evaluation
Marc Ferdinand Lensink, Nessim RAOURAOUA, Guillaume Brysbaert, Sameer S Velankar, Shoshana J. Wodak, Alexandre M. J. J. Bonvin · 2025 · Proteins Structure Function and Bioinformatics
Guidelines To Predict Binding Poses of Antibody–Integrin Complexes
Beatriz Chaves, G. Sartori, D. B. VASCONCELOS, Wilson Savino, Ernesto R. Caffarena, Vinı́cius Cotta-de-Almeida, João H. M. da Silva · 2020 · ACS Omega
HINT, a code for understanding the interaction between biomolecules: a tribute to Donald J. Abraham
Glen E. Kellogg, Anna Marabotti, Francesca Spyrakis, Andrea Mozzarelli · 2023 · Frontiers in Molecular Biosciences
Approaches for network based drug discovery
Priyanka Jayachandran, Suganya Ilango, Biswaranjan Paital, Shravani Bhanja, Ramalingam Nirmaladevi · 2021 · Frontiers in Bioscience-Scholar
Current Computational Methods for Protein-peptide Complex Structure Prediction
Chao Yang, Xianjin Xu, Changcheng Xiang · 2023 · Current Medicinal Chemistry
Using Kendall-τ Meta-Bagging to Improve Protein-Protein Docking Predictions
Jérôme Azé, Thomas Bourquard, Sylvie Hamel, Anne Poupon B, David W. Ritchie · 2011 · Lecture notes in computer science
A holistic molecular docking approach for predicting protein-protein complex structure
Xinqi Gong, Bin Liu, Shan Chang, Chunhua Li, Weizu Chen, Cunxin Wang · 2010 · Science China Life Sciences
Accounting for Large Amplitude Protein Deformation during in Silico Macromolecular Docking
Karine Bastard, Adrien Saladin, Chantal Prévost · 2011 · International Journal of Molecular Sciences
XPairIt Docking Protocolfor peptide docking and analysis
Michael S. P. Sellers, Margaret M. Hurley · 2015 · Molecular Simulation
ReplicOpter: A replicate optimizer for flexible docking
Omar Demerdash, Amanda Buyan, Julie C. Mitchell · 2010 · Proteins Structure Function and Bioinformatics
Properties that rank protein:protein docking poses with high accuracy
Inês C. M. Simões, João T. S. Coimbra, Rui P. P. Neves, Inês P. D. Costa, Maria João Ramos, Pedro Alexandrino Fernandes · 2018 · Physical Chemistry Chemical Physics
The CASP13-CAPRI targets as case studies to illustrate a novel scoring pipeline integrating CONSRANK with clustering and interface analyses
Didier Barradas‐Bautista, Zhen Zhu Cao, Luigi Cavallo, Romina Oliva · 2020 · BMC Bioinformatics
In silico Techniques for Prospecting and Characterizing Monoclonal Antibodies
Tânia Maria Manieri, Carolina Georg Magalhães, Daniela Yumi Takata, João Victor Batalha-Carvalho, Ana Maria Moro · 2020 · IntechOpen eBooks
Machine learning assessment of the binding region as a tool for more efficient computational receptor-ligand docking
Matjaž Simončič, Miha Lukšič, Maksym Druchok · 2022 · Journal of Molecular Liquids
The effects of somatic mutations on EGFR interaction with anti‐EGFR monoclonal antibodies: Implication for acquired resistance
Maryam Tabasinezhad, Eskanadr Omidinia, Yeganeh Talebkhan, Mir Davood Omrani, Fereidoun Mahboudi, Hamid Ghaedi, Wolfgang Wenzel · 2019 · Proteins Structure Function and Bioinformatics
Fine-tuning of intrinsic N-Oct-3 POU domain allostery by regulatory DNA targets
Robert J. Alazard, Lionel Mourey, Christine Ebel, Petr Valeryevich Konarev, Maxim V. Petoukhov, Dmitri I. Svergun, Monique Érard · 2007 · Nucleic Acids Research
Assessing Structural Predictions of Protein–Protein Recognition: The CAPRI Experiment
Joël Janin, Shoshana J. Wodak, Marc Ferdinand Lensink, Sameer S Velankar · 2015 · Reviews in computational chemistry
Network-Based Analysis for Biological Discovery
Lokesh P. Tripathi, Y. Ann Chen, Kenji Mizuguchi, Yoichi Murakami · 2018 · Elsevier eBooks
From Traditional Methods to Deep Learning Approaches: Advances in Protein–Protein Docking
Linlong Jiang, Ke Zhang, Kai Zhu, Hui Zhang, Chao Shen, Tingjun Hou · 2025 · Wiley Interdisciplinary Reviews Computational Molecular Science
Sampling and Ranking of Protein Conformations Using Machine Learning Techniques Do Not Improve the Quality of Rigid Protein–Protein Docking
Stratiichuk, Roman, Kyrylenko, Roman, Koleiev, Ihor, Savchenko, Illia, Voitsitskyi, Taras, Husak, Vladyslav, Yesylevskyy, Semen, Starosyla, Serhii, Nafiiev, Alan · 2025 · Journal of Chemical Information and Modeling
Interactome Analysis and Docking Sites of MutS Homologs Reveal New Physiological Roles in Arabidopsis thaliana
Mohamed Ragab AbdelGawwad, Aida Marić, Abdullah Ahmed Alghamdi, Ashraf Atef Hatamleh · 2019 · Molecules