The analysis of cross‐over trials with baseline measurements
Abstract
The statistical power of cross‐over trials can be increased by taking ‘baseline’ measurements of the outcome variable at the start of each treatment period. Analysis of covariance (ANCOVA), rather than analysis of change scores, takes best advantage of this. However, ANCOVA can give biased treatment effect estimates in observational studies with true baseline imbalance. While in truth balanced, chance baseline imbalance is possible in individual randomized cross‐over studies due to their typically small sample size. Although such chance imbalance does not cause biased estimation on average over repeated trials, this simulation study will aim to confirm the appropriateness of ANCOVA when faced with the analysis of data from an individual trial in which chance baseline imbalance is clearly apparent. Randomized cross‐over trials were simulated, varying in sample size and the pattern and strength of correlation between repeated measures. Estimates from ANCOVA, change scores, and post‐treatment difference were unbiased on average across each set of simulated data sets. ANCOVA and change scores could use baseline information to improve precision, but change scores could also reduce precision if baseline measures were uninformative. Change scores only were correlated with chance within‐subject baseline imbalance. All three estimators could be correlated with chance between‐subjects imbalance in the first period baseline measurements, the strongest associations being with the post‐treatment difference. Consistent results were obtained from a real data example. In conclusion, ANCOVA took best advantage of baseline measures to improve precision, and avoided bias in the widest set of circumstances with chance imbalance in those baseline measures. Copyright © 2010 John Wiley & Sons, Ltd.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Treatment effects were tested using an ANCOVA approach for AB/BA cross-over designs with baseline measurements before each treatment.
“We tested for treatment effects (oxytocin versus placebo) using the analysis of covariance (ancova) approach described by Senn 49 and Metcalfe 56 for the analysis of AB/BA cross‐over designs with baseline measurements before each treatment.”
From The Analgesic Effect of Oxytocin in Humans: A Double‐Blind, Placebo‐Controlled Cross‐Over Study Using Laser‐Evoked Potentials (2016) · cites this paper as [56]
Cites
The two‐period cross‐over clinical trial.
Hills, M., & Armitage, P. (1979) · British Journal of Clinical Pharmacology · doi:10.1111/j.1365-2125.1979.tb05903.x · Cited by 1,403 · see citing works
Van Breukelen, G. J. P. (2006) · Journal of Clinical Epidemiology · doi:10.1016/j.jclinepi.2006.02.007 · Cited by 765 · see citing works
Cross‐over Trials In Clinical Research
Senn, S. (2002) · doi:10.1002/0470854596 · Cited by 653 · see citing works
Change from baseline and analysis of covariance revisited
Senn, S. J. (2006) · Statistics in Medicine · doi:10.1002/sim.2682 · Cited by 392 · see citing works
Covariate imbalance and random allocation in clinical trials
Senn, S. J. (1989) · Statistics in Medicine · doi:10.1002/sim.4780080410 · Cited by 281 · see citing works
A critique of recent research on the two-treatment crossover design
Fleiss, J. L. (1989) · Controlled Clinical Trials · doi:10.1016/0197-2456(89)90065-2 · Cited by 164 · see citing works
Suri, R., Metcalfe, C. D., Lees, B., Grieve, R., Flather, M. D., Normand, C. E. M., Thompson, S. G., Bush, A., & Wallis, C. (2001) · The Lancet · doi:10.1016/s0140-6736(01)06412-1 · Cited by 153 · see citing works
Self-citationThe use of baseline covariates in crossover studies
Kenward, M. G., & Roger, J. (2009) · Biostatistics · doi:10.1093/biostatistics/kxp046 · Cited by 138 · see citing works
The analysis of data from 2 × 2 cross‐over trials with baseline measurements
Kenward, M. G., & Jones, B. C. (1987) · Statistics in Medicine · doi:10.1002/sim.4780060806 · Cited by 81 · see citing works
Suri, R., Wallis, C., Bush, A., Thompson, S. G., Normand, C. E. M., Flather, M. D., Grieve, R., Metcalfe, C. D., & Lees, B. (2002) · Health Technology Assessment · doi:10.3310/hta6340 · Cited by 40 · see citing works
Self-citationThe clinical effectiveness of trastuzumab for breast cancer: a systematic review
Lewis, R. A., Bagnall, A., Forbes, C., Shirran, E. A., Duffy, S., Kleijnen, J., Riemsma, R. P., & ter Riet, G. (2002) · Health Technology Assessment · doi:10.3310/hta6130 · Cited by 20 · see citing works
In defence of analysis of covariance: A reply to Chambless and Roeback
Senn, S. J. (1995) · Statistics in Medicine · doi:10.1002/sim.4780142011 · Cited by 17 · see citing works
Regression toward the mean in 2 × 2 crossover designs with baseline measurements
Grender, J. M., Johnson, W. D., & Elston, R. C. (1992) · Statistics in Medicine · doi:10.1002/sim.4780110604 · Cited by 11 · see citing works
Grender, J. M., Johnson, W. D., & Elston, R. C. (1993) · Statistics in Medicine · doi:10.1002/sim.4780121110 · Cited by 2 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Habre, R., Zhou, H. C., Eckel, S. P., Enebish, T., Fruin, S. A., Bastain, T. M., Rappaport, E. B., & Gilliland, F. D. (2018) · Environment International · doi:10.1016/j.envint.2018.05.031 · Cited by 136 · see citing works
Pripfl, J., Tomova, L., Riečanský, I., & Lamm, C. (2013) · Brain stimulation · doi:10.1016/j.brs.2013.11.003 · Cited by 110 · see citing works
Notay, K., Incognito, A. V., & Millar, P. J. (2017) · American Journal of Physiology-Heart and Circulatory Physiology · doi:10.1152/ajpheart.00163.2017 · Cited by 85 · see citing works
A randomized, controlled, double-blind, crossover trial of zonisamide in myoclonus-dystonia
Hainque, É., Vidailhet, M., Cozic, N., Charbonnier‐Beaupel, F., Thobois, S., Tranchant, C., Brochard, V. B., Glibert, G., Drapier, S., Mutez, E., et al. (2016) · Neurology · doi:10.1212/wnl.0000000000002631 · Cited by 80 · see citing works
Paloyelis, Y., Krahé, C., Maltezos, S., Williams, S. C., Howard, M. A., & Fotopoulou, A. (2016) · Journal of Neuroendocrinology · doi:10.1111/jne.12347 · Cited by 61 · see citing works
A recommended analysis for 2 × 2 crossover trials with baseline measurements
Mehrotra, D. V. (2014) · Pharmaceutical Statistics · doi:10.1002/pst.1638 · Cited by 51 · see citing works
Hösl, M., Böhm, H., Eck, J., Döderlein, L., & Arampatzis, A. (2018) · Gait & Posture · doi:10.1016/j.gaitpost.2018.07.171 · Cited by 48 · see citing works
Zhao, X., Niu, L., Clerici, C., Russo, R., Byrd, M., & Setchell, K. D. R. (2019) · Clinical mass spectrometry · doi:10.1016/j.clinms.2019.05.002 · Cited by 21 · see citing works
Deciphering assumptions about stepped wedge designs: the case of Ebola vaccine research
Doussau, A., & Grady, C. (2016) · Journal of Medical Ethics · doi:10.1136/medethics-2015-103292 · Cited by 18 · see citing works
Behavioral carry-over effect and power consideration in crossover trials
Shi, D., & Ye, T. (2024) · Biometrics · doi:10.1093/biomtc/ujae023 · Cited by 17 · see citing works
Farrell, G., Reily-Bell, M., Chapple, C., Kennedy, E., Sampath, K. K., Gisselman, A. S., Cook, C. E., Katare, R., & Tumilty, S. (2023) · Journal of Manual & Manipulative Therapy · doi:10.1080/10669817.2023.2177071 · Cited by 9 · see citing works
Ruiz, M., Groessing, A., Guran, C.-N. A., Koçan, A. U., Mikuš, N., Nater, U. M., Kouwer, K., Posserud, M.-B. R., Salomon-Gimmon, M., Todorova, B., et al. (2023) · Frontiers in Psychiatry · doi:10.3389/fpsyt.2023.1256771 · Cited by 11 · see citing works
Application of linear mixed-effects models to crossover designs.
Zhou, L. (2012) · doi:10.18297/etd/1646 · Cited by 8 · see citing works
Zunhammer, M., Goltz, G., Schweifel, M., Stuck, B. A., & Bingel, U. (2022) · Clinical and Translational Science · doi:10.1111/cts.13397 · Cited by 6 · see citing works
Xu, R., Mehrotra, D. V., & Shaw, P. A. (2018) · Statistics in Medicine · doi:10.1002/sim.7834 · Cited by 6 · see citing works
Self‐compassion for youth in small city centres: A school‐based pilot project
Henson, A. M., Ruglis, J., Sinacore, A. L., Fitzpatrick, M. R., & Lanteigne, D. M. (2020) · Counselling and Psychotherapy Research · doi:10.1002/capr.12374 · Cited by 6 · see citing works
Noah, T. L., Alexis, N. E., Bennett, W. D., Hernandez, M. L., Burbank, A. J., Li, H., Zhou, H., Jaspers, I., & Peden, D. B. (2024) · Journal of Allergy and Clinical Immunology Global · doi:10.1016/j.jacig.2024.100347 · Cited by 5 · see citing works
Webster, L. R., Hansen, E., Stoddard, G. J., Rynders, A., Ostler, D., & Lennon, H. (2021) · Current Clinical Pharmacology · doi:10.2174/1574884716666210225083213 · Cited by 5 · see citing works
Vogelnik, K., Trošt, M., Tomše, P., Petrović, I. N., Pešić, A. T., Radovanovic, S. M., & Kojović, M. (2024) · Parkinsonism & Related Disorders · doi:10.1016/j.parkreldis.2024.107014 · Cited by 4 · see citing works
Intrathecal Mesenchymal Stem Cells in Progressive Multiple Sclerosis
Kvistad, C. E., Kråkenes, T., Holmøy, T., Eidem, L. E., Steffensen, L., Wesnes, K., Rojewski, M., Eichele, T., Wergeland, S., Gavasso, S., et al. (2026) · Neurology · doi:10.1212/wnl.0000000000214915 · Cited by 4 · see citing works
Improved power in crossover designs through linear combinations of baselines
Jemielita, T., Putt, M. E., & Mehrotra, D. V. (2016) · Statistics in Medicine · doi:10.1002/sim.7081 · Cited by 3 · see citing works
Biotène Versus HydraSmile for Radiation‐Induced Xerostomia: Randomized Double‐Blind Cross‐Over Study
Harley, R. J., Bowers, E. M. R., Li, J., Bisignani, M., Nilsen, M. L., & Johnson, J. T. (2025) · OTO Open · doi:10.1002/oto2.70038 · Cited by 2 · see citing works
Jalali, M., Bagheri, Z., Zare, N., & Ayatollahi, S. M. T. (2020) · BioMed Research International · doi:10.1155/2020/8475154 · Cited by 2 · see citing works
Hofbauer, L. M., & Rodriguez, F. S. (2025) · Dementia · doi:10.1177/14713012251334185 · Cited by 1 · see citing works
Lichtensztejn, M., Cui, A., Geretsegger, M., Lundervold, A. J., Koelsch, S., Pfabigan, D. M., Aßmus, J., Langeland, E., Ruiz, M., Tabernig, C. B., et al. (2025) · BMJ Open · doi:10.1136/bmjopen-2024-095136 · Cited by 1 · see citing works
Buck, E. D. J. D., Scheers, H., Vandekerckhove, P. G., Vermeulen, D., Heidbüchel, H., & Heuten, H. (2024) · Resuscitation Plus · doi:10.1016/j.resplu.2024.100722 · Cited by 1 · see citing works
How to approach baseline imbalance in cross-randomised studies?
Gholamrezaei, A., & Jafari, H. (2022) · Autonomic Neuroscience · doi:10.1016/j.autneu.2022.103020 · Cited by 1 · see citing works
Lichtensztejn, M., Cui, A., Geretsegger, M., Lundervold, A. J., Koelsch, S., Pfabigan, D. M., Aßmus, J., Langeland, E., Tabernig, C. B., Skogseth, R. E., et al. (2024) · medRxiv · doi:10.1101/2024.09.25.24313991 · Cited by 1 · see citing works
Efficient baseline utilization for incomplete block crossover clinical trials
Jemielita, T., Putt, M. E., & Mehrotra, D. V. (2017) · Statistical Methods in Medical Research · doi:10.1177/0962280217736790
Koenig, J., & Kaess, M. (2022) · Autonomic Neuroscience · doi:10.1016/j.autneu.2022.103055
Zhou, L., Zhang, J., Zeng, M., & Zhang, L. (2024) · Chinese Science Bulletin (Chinese Version) · doi:10.1360/tb-2024-0470
Heimann, G., Dumortier, T., & Meiser, K. (2025) · Journal of Pharmacokinetics and Pharmacodynamics · doi:10.1007/s10928-025-10007-6
- Authors
- Metcalfe, C.
- Affiliations
- University of Bristol (GB)
- Corresponding author
- Metcalfe, Chris
- ORCID
- Metcalfe, Chris
- Venue
- Statistics in Medicine
- Publisher
- Wiley
- Published
- 2010-12-16
- Volume
- 29
- Issue
- 30
- Pages
- 3211-3218
- ISSN
- 0277-6715 (ISSN-L)
- 1097-0258
- OpenAlex
- W2137430824
- Cited by
- 32
- References
- 14
- Citations by year
- 2026: 1 · 2025: 4 · 2024: 6 · 2023: 2 · 2022: 3 · 2021: 1 · 2020: 2 · 2019: 1 · 2018: 3 · 2017: 2 · 2016: 3 · 2015: 1 · 2014: 1 · 2013: 1 · 2012: 1
- FWCI
- 0.55
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Statistics in Medicine (publishedVersion)
- PubMed (publishedVersion)
- Explore Bristol Research (submittedVersion)
- Funders
- University of Bristol
- Great Ormond Street Hospital for Children
- Health Technology Assessment Programme
- Topics
- Physical Sciences › Mathematics › Statistics and Probability › Statistical Methods in Clinical Trials
- Physical Sciences › Mathematics › Statistics and Probability › Statistical Methods and Bayesian Inference
- Physical Sciences › Mathematics › Statistics and Probability › Advanced Causal Inference Techniques
- Keywords
- crossover trial, baseline measurement, covariance analysis, change scores, treatment effect estimation, baseline imbalance, estimation bias, statistical power, repeated measures correlation
- MeSH terms
- Child, Computer Simulation, Cystic Fibrosis, Data Interpretation, Statistical, Deoxyribonucleases, Forced Expiratory Volume, Humans, Randomized Controlled Trials as Topic, Cross-Over Studies
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review