limma: Linear Models for Microarray Data

Cited by (1,040)

Items 601–700 of 1,040

1. Biphasic regulation of the transcription factor ABORTED MICROSPORES ( AMS ) is essential for tapetum and pollen development in Arabidopsis
   Alison C Tidy, Simon P. Pearce, Leah R. Band, Caiyun Yang, Ivana Ferjentsikova, John R. King, Zheng Yuan, Dabing Zhang, Zoe A. Wilson · 2016 · New Phytologist
2. Human Wharton's Jelly-Derived Stem Cells Display a Distinct Immunomodulatory and Proregenerative Transcriptional Signature Compared to Bone Marrow-Derived Stem Cells
   Raf Donders, Jeroen F. J. Bogie, Stylianos Ravanidis, Pascal Gervois, Marjan Vanheusden, Raphaël Marée, Marie Schrynemackers, Hubert J.M. Smeets, Jef Pinxteren, Kristel Gijbels et al. · 2017 · Stem Cells and Development
3. Epigenetic dysregulation of naive CD4+ T-cell activation genes in childhood food allergy
   David Martino, Melanie R. Neeland, Thanh D. Dang, Joanna E. Cobb, Justine A. Ellis, Alice Barnett, Mimi L.K. Tang, Peter Vuillermin, Katrina Jane Allen, Richard Saffery · 2018 · Nature Communications
4. Analysis of Differentially Expressed Genes and Molecular Pathways in Familial Hypercholesterolemia Involved in Atherosclerosis: A Systematic and Bioinformatics Approach
   S. Udhaya Kumar, D. Thirumal Kumar, R Bithia, Srivarshini Sankar, R. Magesh, Mariem Sidenna, C. George Priya Doss, Hatem Zayed · 2020 · Frontiers in Genetics
5. Methyl-donor supplementation in obese mice prevents the progression of NAFLD, activates AMPK and decreases acyl-carnitine levels
   Christoph Dahlhoff, Stefanie Worsch, Manuela Sailer, Björn Hummel, Jarlei Fiamoncini, Kirsten Uebel, Rima Obeid, Christian Scherling, Jürgen Geisel, B. Bader et al. · 2014 · Molecular Metabolism
6. Notch1 mediates uterine stromal differentiation and is critical for complete decidualization in the mouse
   Yalda Afshar, Jae‐Wook Jeong, Damian Roqueiro, Francesco John DeMayo, John P. Lydon, Freddy Radtke, Rachel Radnor, Lucio Miele, Asgerally T. Fazleabas · 2011 · The FASEB Journal
7. Transcriptional Profiling of Rice Early Response to Magnaporthe oryzae Identified OsWRKYs as Important Regulators in Rice Blast Resistance
   Tong Wei, Bin Ou, Jinbin Li, Yang Zhao, Dongshu Guo, Youyong Zhu, Zhangliang Chen, Hongya Gu, Chengyun Li, Genji Qin et al. · 2013 · PLoS ONE
8. MicroRNAs Regulate p21Waf1/Cip1 Protein Expression and the DNA Damage Response in Human Embryonic Stem Cells
   Dáša Bohačiaková, Marek Mráz, Tomáš Bárta, Karla Plevová, Vladimír Vinarský, Zuzana Holubcová, Josef Jaroš, Petr Dvořák, Šárka Pospı́šilová, Aleš Hampl · 2012 · Stem Cells
9. microRNA expression signatures and parallels between monocyte subsets and atherosclerotic plaque in humans
   Bernd Denecke, André Rostalsky, Mihail Hristov, Thomas A. Koeppel, Kiril Bidzhekov, Lin Gan, Alma Zernecke, Christian Weber · 2012 · Thrombosis and Haemostasis
10. Current challenges in software solutions for mass spectrometry-based quantitative proteomics
    Salvatore Cappadona, Peter R. Baker, Pedro R. Cutillas, Albert J. R. Heck, Bas van Breukelen · 2012 · Amino Acids
11. The biology of coral metamorphosis: Molecular responses of larvae to inducers of settlement and metamorphosis
    Lauretta C. Grasso, Andrew Peter Negri, Sylvain Forêt, Robert B. Saint, David C. Hayward, David John Miller, Eldon E. Ball · 2011 · Developmental Biology
12. Biology of Preimplantation Conceptus at the Onset of Elongation in Dairy Cows1
    Eduardo S. Ribeiro, L.F. Greco, Rafael Sisconeto Bisinotto, Fabio Soares de Lima, William Watters Thatcher, José E.P. Santos · 2016 · Biology of Reproduction
13. DNMT1 Inhibition Reprograms Pancreatic Cancer Stem Cells via Upregulation of the miR-17-92 Cluster
    Sladjana Zagorac, Sonia Alcalá, Gustavo F. Bayón, Tony Bou Kheir, Matthieu J. Schoenhals, Anna González‐Neira, Mario F. Fraga, Alexandra Aicher, Christopher Heeschen, Bruno Sáinz · 2016 · Cancer Research
14. Hyperglycemia acts in synergy with hypoxia to maintain the pro-inflammatory phenotype of macrophages
    Mangesh Morey, Peadar Ó Gaora, Abhay S. Pandit, Christophe Hélary · 2019 · PLoS ONE
15. Contextual Flexibility in Pseudomonas aeruginosa Central Carbon Metabolism during Growth in Single Carbon Sources
    Stephen K. Dolan, Michael Kohlstedt, Stephen Trigg, Pedro P. Vallejo Ramirez, Christoph Wittmann, Clemens F. Kaminski, Martin Welch · 2020 · mBio
16. Biomedical Informatics for Cancer Research
    Michael F. Ochs, Ramana V. Davuluri, John T. Casagrande · 2010 · Springer eBooks
17. Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants
    David J. Weston, Lee E. Gunter, Alistair Rogers, Stan D. Wullschleger · 2008 · BMC Systems Biology
18. Transcriptomic and Phenotypic Analyses Identify Coregulated, Overlapping Regulons among PrfA, CtsR, HrcA, and the Alternative Sigma Factors σ B , σ C , σ H , and σ L in Listeria monocytogenes
    Soraya Chaturongakul, Sarita Raengpradub, M. Elizabeth Palmer, Teresa M. Bergholz, Renato Hohl Orsi, Yuewei Hu, Juliane Ollinger, Martin Wiedmann, Kathryn J. Boor · 2010 · Applied and Environmental Microbiology
19. Gene Coexpression Networks Reveal Key Drivers of Phenotypic Divergence in Lake Whitefish
    Marie Filteau, Scott A. Pavey, Jérôme St‐Cyr, Louis Bernatchez · 2013 · Molecular Biology and Evolution
20. Shared Transcriptional Signatures in Major Depressive Disorder and Mouse Chronic Stress Models
    Joseph R. Scarpa, Mena Fatma, Yong‐Hwee Eddie Loh, Said Romaric Traore, Théo Stefan, Ting Huei Chen, Eric J. Nestler, Benoît Labonté · 2020 · Biological Psychiatry
21. An epigenetic clock for human skeletal muscle
    Sarah Amandine Caroline Voisin, Nicholas R. Harvey, Larisa Margaret Haupt, Lyn Robyn Griffiths, Kevin J. Ashton, Vernon G. Coffey, Thomas M. Doering, Jamie‐Lee M. Thompson, Christian Benedict, Jonathan Cedernaes et al. · 2020 · Journal of Cachexia Sarcopenia and Muscle
22. The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis
    Cyril Addi, Adrien Presle, Stéphane Frémont, Frédérique Cuvelier, Murielle Rocancourt, Florine Milin, Sandrine Schmutz, Julia Chamot‐Rooke, Thibaut Douché, Magalie Duchateau et al. · 2020 · Nature Communications
23. Therapy-induced lipid uptake and remodeling underpin ferroptosis hypersensitivity in prostate cancer
    Kaylyn D. Tousignant, Anja Rockstroh, Berwyck L. J. Poad, Ali Talebi, Reuben S. E. Young, Atefeh Taherian Fard, Rajesh Gupta, Tuo Zang, Chenwei Wang, Melanie Lehman et al. · 2020 · Cancer & Metabolism
24. Decrypting bacterial polyphenol metabolism in an anoxic wetland soil
    Bridget B. McGivern, Malak Tfaily, Mikayla Borton, Suzanne M. Kosina, Rebecca A. Daly, Carrie Nicora, Samuel Owen Purvine, Allison R. Wong, Mary S. Weir Lipton, David W Hoyt et al. · 2021 · Nature Communications
25. Systems Genetics Reveals the Functional Context of PCOS Loci and Identifies Genetic and Molecular Mechanisms of Disease Heterogeneity
    Michelle R. Jones, Meredith A. Brower, Ning Xu, Jinrui Cui, Emebet Mengesha, Yii‐Der Ida Chen, Kent D. Taylor, Ricardo Azziz, Mark O. Goodarzi · 2015 · PLoS Genetics
26. Pathological brain plasticity and cognition in the offspring of males subjected to postnatal traumatic stress
    Johannes Bohacek, M Farinelli, Osvaldo Mirante, Guido Steiner, Katharina Gapp, Guyllaume Coiret, Martin Ebeling, Gonzalo Durán-Pacheco, A. Leonardo Iniguez, Francesca Manuella et al. · 2014 · Molecular Psychiatry
27. MicroRNA Expression Profiles of Whole Blood in Lung Adenocarcinoma
    Santosh Kumar Patnaik, Sai Yendamuri, Eric D. Kannisto, John C. Kucharczuk, Sunil Kumar Singhal, Anil Vachani · 2012 · PLoS ONE
28. Transcriptome dynamics of a broad host-range cyanophage and its hosts
    Shany Doron, Ayalla Fedida, Miguel A. Hernández‐Prieto, Gazalah Sabehi, Iris Karunker, Damir Stazic, Roi Feingersch, Claudia Steglich, Matthias Erwin Futschik, Debbie Lindell et al. · 2015 · The ISME Journal
29. Deficiency of α-actinin-3 is associated with increased susceptibility to contraction-induced damage and skeletal muscle remodeling
    Jane T. Seto, Monkol Lek, Kate G R Quinlan, Peter J. Houweling, Xi Zheng, Fleur C. Garton, Daniel G. MacArthur, Joanna M. Raftery, Sean M. Garvey, Michael A. Hauser et al. · 2011 · Human Molecular Genetics
30. The Nuclear Immune Receptor RPS4 Is Required for RRS1SLH1-Dependent Constitutive Defense Activation in Arabidopsis thaliana
    Kee Hoon Sohn, Cécile Segonzac, Ghanasyam Rallapalli, Panagiotis F. Sarris, Joo Yong Woo, Simon J. Williams, Toby E. Newman, Kyung-Hee Paek, Boštjan Kobe, Jonathan D. G. Jones · 2014 · PLoS Genetics
31. In Pichia pastoris, growth rate regulates protein synthesis and secretion, mating and stress response
    Corinna Rebnegger, Alexandra Bettina Graf, Minoska Valli, Matthias G. Steiger, Brigitte Gasser, Michael Maurer, Diethard Mattanovich · 2013 · Biotechnology Journal
32. Female-Biased Expression on the X Chromosome as a Key Step in Sex Chromosome Evolution in Threespine Sticklebacks
    Erica H. Leder, Jose M. Cano, Tuomas Leinonen, Robert Brian O’Hara, Mikko Nikinmaa, Craig Robert Primmer, Juha Merilä · 2010 · Molecular Biology and Evolution
33. Time-course analysis of genome-wide gene expression data from hormone-responsive human breast cancer cells
    Margherita Mutarelli, Luigi Cicatiello, Lorenzo Ferraro, Olì Maria Victoria Grober, Maria Ravo, Angelo M. Facchiano, Claudia Angelini, Alessandro Weisz · 2008 · BMC Bioinformatics
34. Perturbation of microbiota in one-day old broiler chickens with antibiotic for 24 hours negatively affects intestinal immune development
    Dirkjan Schokker, Alfons J. M. Jansman, Gosse Veninga, Naomi De Bruin, S.A. Vastenhouw, F.M. de Bree, Alex Bossers, Johanna M.J. Rebel, Mari A. Smits · 2017 · BMC Genomics
35. Small chloroplast-targeted DnaJ proteins are involved in optimization of photosynthetic reactions in Arabidopsis thaliana
    Kun‐Ming Chen, Maija Holmström, Wuttinun Raksajit, Marjaana Suorsa, Mirva Piippo, Eva–Mari Aro · 2010 · BMC Plant Biology
36. Dysregulation of gene expression as a cause of Cockayne syndrome neurological disease
    Yuming Wang, Probir Chakravarty, Michael Ranes, Gavin P. Kelly, Philip John Brooks, Edward G. Neilan, Aengus Stewart, Giampietro Schiavo, Jesper Qualmann Svejstrup · 2014 · Proceedings of the National Academy of Sciences
37. Cell cycle population effects in perturbation studies
    Eoghan O’Duibhir, Philip Lijnzaad, Joris J. Benschop, Tineke Laura Lenstra, Dik van Leenen, Marian J.A. Groot Koerkamp, Thanasis Margaritis, Mariel O. Brok, Patrick Kemmeren, Frank C. P. Holstege · 2014 · Molecular Systems Biology
38. Hypermethylation of specific microRNA genes in MLL-rearranged infant acute lymphoblastic leukemia: major matters at a micro scale
    Dominique J. P. M. Stumpel, Diana Schotte, Ellen A.M. Turenhout, Pauline Schneider, Lidija Seslija, Renée X. de Menezes, Víctor E. Márquez, Rob Pieters, Monique L. den Boer, Ronald W. Stam · 2010 · Leukemia
39. Evaluation of normalization methods in mammalian microRNA-Seq data
    Lana Xia Garmire, Shankar Subramaniam · 2012 · RNA
40. Spatiotemporal variation of mammalian protein complex stoichiometries
    Alessandro Ori‬‬, Murat Iskar, Katarzyna Buczak, Panagiotis L. Kastritis, Luca Parca, Amparo Andrés‐Pons, Stephan Singer, Peer Bork B, Martin Beck · 2016 · Genome biology
41. Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
    Simone Ecker, Lu Chen, Véra Pancaldi, Frederik Otzen Bagger, José M. Fernández, Enrique Carrillo de Santa Pau, David Juan, Alice Mann, Stephen B. Watt, Francesco Paolo Casale et al. · 2017 · Genome biology
42. Apple dwarfing rootstocks exhibit an imbalance in carbohydrate allocation and reduced cell growth and metabolism
    Toshi Foster, Peter McAtee, Chethi N. Waite, Helen L Boldingh, Tony K. McGhie · 2017 · Horticulture Research
43. Landscape of nuclear transport receptor cargo specificity
    Marie‐Therese Mackmull, Bernd Klaus, Ivonne Heinze, Manopriya Chokkalingam, Andreas Beyer, Robert B. Russell, Alessandro Ori‬‬, Martin Beck · 2017 · Molecular Systems Biology
44. GROWTH-REGULATING FACTOR 9 negatively regulates arabidopsis leaf growth by controlling ORG3 and restricting cell proliferation in leaf primordia
    Mohammad Amin Omidbakhshfard, Ushio Fujikura, Justyna Jadwiga Olas, Gang‐Ping Xue, Salma Balazadeh, Bernd Mueller‐Roeber · 2018 · PLoS Genetics
45. Interference With PPARγ Signaling Causes Cerebral Vascular Dysfunction, Hypertrophy, and Remodeling
    Andreas Beyer, Gary L. Baumbach, Carmen M. Halabi, Mary L. Modrick, Cynthia M. Lynch, Thomas D. Gerhold, Shams M. Ghoneim, Willem J. de Lange, Henry L. Keen, Yau-Sheng Tsai et al. · 2008 · Hypertension
46. Assessment of toxicity and genotoxicity of low doses of 5-fluorouracil in zebrafish ( Danio rerio ) two-generation study
    Róbert Kovács, Zsolt Csenki, Katalin Bakos, Béla Urbányi, Ákos Horváth, Vera Garaj‐Vrhovac, Goran Gajski, Marko Gerić, Noelia Negreira, Miren López de Alda et al. · 2015 · Water Research
47. Genome‐wide RNA interference analysis of renal carcinoma survival regulators identifies MCT4 as a Warburg effect metabolic target
    Marco Gerlinger, Cláudio R. Santos, Bradley Spencer‐Dene, Pierre Martinez, David Endesfelder, Rebecca A. Burrell, Marcus Hermann Friedrich Vetter, Ming Jiang, Rebecca E. Saunders, Gavin P. Kelly et al. · 2012 · The Journal of Pathology
48. Changes in circulating microRNAs after radiochemotherapy in head and neck cancer patients
    Isolde Summerer, Maximilian Niyazi, Kristian Unger, Adriana Pitea, Verena Zangen, Julia Heß, Michael John Atkinson, Claus Belka, Simone Moertl, Horst F. Zitzelsberger · 2013 · Radiation Oncology
49. The histone demethylase enzyme KDM3A is a key estrogen receptor regulator in breast cancer
    Mark Wade, Dominic L. Jones, Laura Wilson, Jacqueline Stockley, Kelly Coffey, Craig N. Robson, Luke Gaughan · 2014 · Nucleic Acids Research
50. Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis
    Outi Uimari, Nilüfer Rahmioğlu, Dale R. Nyholt, Katy Vincent, Stacey A. Missmer, Christian Malte Becker, Andrew P. Morris, Grant W. Montgomery, Krina T. Zondervan · 2017 · Human Reproduction
51. Necrotrophism Is a Quorum-Sensing-Regulated Lifestyle in Bacillus thuringiensis
    Thomas Dubois, Karoline Fægri, Stéphane Perchat, Christelle Lemy, Christophe Buisson, Christina Nielsen‐LeRoux, Michel Gohar, Philippe Jacques, Nalini Ramarao, Anne‐Brit Kolstø et al. · 2012 · PLoS Pathogens
52. Grafting with rootstocks induces extensive transcriptional re-programming in the shoot apical meristem of grapevine
    Sarah Jane Cookson, Nathalie Ollat · 2013 · BMC Plant Biology
53. Membrane transporters and carbon metabolism implicated in chloride homeostasis differentiate salt stress responses in tolerant and sensitive Citrus rootstocks
    Javier Brumós, José Manuel Colmenero-Flores, Ana Conesa, Pedro Izquierdo, Guadalupe Sánchez, Domingo J. Iglesias, María F. López‐Climent, ‪Aurelio Gómez‐Cadenas, Manuel Talón · 2009 · Functional & Integrative Genomics
54. Constrained release of lamina-associated enhancers and genes from the nuclear envelope during T-cell activation facilitates their association in chromosome compartments
    Robson, Michael I., de las Heras, Jose I., Czapiewski, Rafal, Sivakumar, Aishwarya, Kerr, Alastair R.W., Schirmer, Eric C. · 2017 · Genome Research
55. Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA sequencing in a porcine model
    Kogelman, Lisette J A, Cirera, Susanna, Zhernakova, Daria V, Fredholm, Merete, Franke, Lude, Kadarmideen, Haja N · 2014 · BMC Medical Genomics
56. A lectin receptor kinase as a potential sensor for extracellular nicotinamide adenine dinucleotide in Arabidopsis thaliana
    Chenggang Wang, Mingqi Zhou, Xudong Zhang, Jin Yao, Yanping Zhang, Zhonglin Mou · 2017 · eLife
57. CGPS: A machine learning-based approach integrating multiple gene set analysis tools for better prioritization of biologically relevant pathways
    Ai Chen, Lei Kong · 2018 · Journal of genetics and genomics/Journal of Genetics and Genomics
58. Data-driven normalization strategies for high-throughput quantitative RT-PCR
    Jessica C. Mar, Yasumasa Kimura, Kate Schroder, Katharine M. Irvine, Yoshihide Hayashizaki, Harukazu Suzuki, David Arthur Hume, John F Quackenbush · 2009 · BMC Bioinformatics
59. How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets
    Peixoto, Lucia, Risso, Davide, Poplawski, Shane G., Wimmer, Mathieu E., Speed, Terence P., Wood, Marcelo A., Abel, Ted · 2015 · Nucleic Acids Research
60. MCF-7 Human Breast Cancer Cells Form Differentiated Microtissues in Scaffold-Free Hydrogels
    Marguerite M. Vantangoli, Samantha J. Madnick, Susan M. Huse, Paula J. Weston, Kim Boekelheide · 2015 · PLoS ONE
61. Regulation of p53 and Rb Links the Alternative NF-κB Pathway to EZH2 Expression and Cell Senescence
    Alessio Iannetti, Adeline Ledoux, Susan J. Tudhope, Hélène Sellier, Bo Zhao, Sophia N. Mowla, Adam Moore, Holger Hummerich, Benjamin E. Gewurz, Simon Cockell et al. · 2014 · PLoS Genetics
62. Global gene expression analysis of human erythroid progenitors
    Alison T. Merryweather‐Clarke, Ann Atzberger, Shamit Soneji, Nicki Gray, Kevin Clark, Craig Waugh, Simon J. McGowan, Stephen Taylor, Asoke Kumar Nandi, William Graham Wood et al. · 2011 · Blood
63. Previous History of Chronic Stress Changes the Transcriptional Response to Glucocorticoid Challenge in the Dentate Gyrus Region of the Male Rat Hippocampus
    Nicole A. Datson, Jessica M.E. van den Oever, Oksana B. Korobko, Ana Marı́a Magariños, E. R. de Kloet, Bruce S. McEwen · 2013 · Endocrinology
64. Environment‐induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children
    Tobias Bauer, Saskia Trump, Naveed Ishaque, Loreen Thürmann, Lei Gu, Mario Bauer, Matthias Bieg, Zuguang Gu, Dieter Weichenhan, Jan‐Philipp Mallm et al. · 2016 · Molecular Systems Biology
65. Isolation of human trophoblastic extracellular vesicles and characterization of their cargo and antiviral activity
    Yingshi Ouyang, Avraham Bayer, Tianjiao Chu, Vladimir A. Tyurin, Valerian E. Kagan, Adrián E. Morelli, Carolyn B. Coyne, Yoel Sadovsky · 2016 · Placenta
66. Extracellular Matrix in Heart Failure: Role of ADAMTS5 in Proteoglycan Remodeling
    Javier Barallobre-Barreiro, Tamás Radovits, Marika Fava, Ursula Mayr, Wen-Yu Lin, Elizaveta Ermolaeva, Diego Martínez-López, Eric L. Lindberg, Elisa Duregotti, László Daróczi et al. · 2021 · Circulation
67. Meta-Analysis and Gene Set Enrichment Relative to ER Status Reveal Elevated Activity of MYC and E2F in the “Basal” Breast Cancer Subgroup
    M. Chehani Alles, Margaret Gardiner‐Garden, David John Nott, Yixin Wang, John A. Foekens, Robert L. Sutherland, Elizabeth A. Musgrove, Christopher John Ormandy · 2009 · PLoS ONE
68. The limitations of simple gene set enrichment analysis assuming gene independence
    Pablo Tamayo, George Steinhardt, Arthur Liberzon, Jill P. Mesirov · 2012 · Statistical Methods in Medical Research
69. Transcriptional response of Arabidopsis seedlings during spaceflight reveals peroxidase and cell wall remodeling genes associated with root hair development
    Taegun Kwon, J. Alan Sparks, Jin Nakashima, Stacy N. Allen, Yuhong Tang, Elison B. Blancaflor · 2015 · American Journal of Botany
70. Integrating transcriptional, metabolomic, and physiological responses to drought stress and recovery in switchgrass (Panicum virgatum L.)
    Eli Meyer, Michael J. Aspinwall, David B. Lowry, Juan Diego Palacio-Mejía, Tierney L. Logan, Philip A. Fay, Thomas Juenger · 2014 · BMC Genomics
71. Heterologous microarray experiments used to identify the early gene response to heat stress in a coral reef fish
    Karin S. Kassahn, Michael Julian Caley, Alister C. Ward, Ashley R. Connolly, Glenn Stone, Ross H. Crozier · 2007 · Molecular Ecology
72. Distinct transcriptomes define rostral and caudal serotonin neurons
    Wylie, Christi J., Hendricks, Timothy J., Zhang, Bing, Wang, Lily, Lu, Pengcheng, Leahy, Patrick, Fox, Stephanie, Maeno, Hiroshi, Deneris, Evan S. · 2010 · The Journal of Neuroscience
73. Genome-Wide Transcriptional Response of Silurana (Xenopus) tropicalis to Infection with the Deadly Chytrid Fungus
    Erica Bree Rosenblum, Thomas J. Poorten, Matthew Lee Settles, Gordon K. Murdoch, Jacques Robert, Nicole Maddox, Michael B. Eisen · 2009 · PLoS ONE
74. Genomics of ADME gene expression: mapping expression quantitative trait loci relevant for absorption, distribution, metabolism and excretion of drugs in human liver
    Adrian Schröder, Kathrin Klein, Stefan Winter, Matthias Georg Schwab, M Bonin, Andreas Zell, Ulrich M. Zanger · 2011 · The Pharmacogenomics Journal
75. Global Transcriptional Dynamics of Diapause Induction in Non-Blood-Fed and Blood-Fed Aedes albopictus
    Xin Huang, Monica F. Poelchau, Peter Armbruster · 2015 · PLoS neglected tropical diseases
76. Crtc1 Activates a Transcriptional Program Deregulated at Early Alzheimer's Disease-Related Stages
    Arnaldo Parra‐Damas, Jorge Valero, Meng Chen, Judit España, Elsa Martín, Isidró Ferrer, José Rodrı́guez-Álvarez, Carlos A. Saura · 2014 · Journal of Neuroscience
77. Hypoxia impacts large adults first: consequences in a warming world
    Melody Susan Clark, Gunnar Husmann, Michael A. S. Thorne, Gavin Burns, Manuela Truebano, Lloyd Samuel Peck, Doris Abele, Eva E. R. Philipp · 2013 · Global Change Biology
78. Limited Gene Expression Variation in Human Embryonic Stem Cell and Induced Pluripotent Stem Cell-Derived Endothelial Cells
    Mark P. White, Abdul Jalil Rufaihah, Lei Liu, Yohannes T. Ghebremariam, Kathryn N. Ivey, John P. Cooke, Deepak Srivastava · 2012 · Stem Cells
79. A Genome-Wide Association Study Identifies Variants Underlying the Arabidopsis thaliana Shade Avoidance Response
    Danièle L. Filiault, Julin Maloof · 2012 · PLoS Genetics
80. Identification of a plastidial phenylalanine exporter that influences flux distribution through the phenylalanine biosynthetic network
    Joshua R. Widhalm, Michael Gutensohn, Heejin Yoo, Funmilayo Adebesin, Yichun Qian, Longyun Guo, Rohit Jaini, Joseph H. Lynch, Rachel M. McCoy, Jacob Tyler Shreve et al. · 2015 · Nature Communications
81. Revised Risk Estimation and Treatment Stratification of Low- and Intermediate-Risk Neuroblastoma Patients by Integrating Clinical and Molecular Prognostic Markers
    André Oberthuer, Dilafruz Juraeva, Barbara Hero, Ruth Volland, Carolina Sterz, René Schmidt, Andreas Faldum, Yvonne Kahlert, Anne Engesser, Shahab Asgharzadeh et al. · 2014 · Clinical Cancer Research
82. The Cerebral Microvasculature in Schizophrenia: A Laser Capture Microdissection Study
    Laura Wiseman Harris, Matthew Thomas Wayland, Martin J. Lan, Margaret Ryan, Thomas Giger, Helen E. Lockstone, Irene Wüthrich, Michael L. Mimmack, Lan Wang, Mark Kotter et al. · 2008 · PLoS ONE
83. Incipient stem cell niche conversion in tissue culture: using a systems approach to probe early events in WUSCHEL ‐dependent conversion of lateral root primordia into shoot meristems
    Steven P. Chatfield, Resmi Capron, Andre Severino, Pier-Andrée Penttilä, Simon E. Alfred, Hardeep K. Nahal-Bose, Nicholas James Provart · 2012 · The Plant Journal
84. Extensive tissue-specific transcriptomic plasticity in maize primary roots upon water deficit
    Nina Opitz, Caroline Marcon, Anja Paschold, Waqas Ahmed Malik, Andrew Lithio, Ronny Brandt, Hans‐Peter Piepho, Dan S. Nettleton, Frank Hochholdinger · 2015 · Journal of Experimental Botany
85. Candida utilis and Chlorella vulgaris Counteract Intestinal Inflammation in Atlantic Salmon (Salmo salar L.)
    Fabian Grammes, Felipe E. Reveco, Odd Helge Romarheim, Thor Landsverk, Liv Torunn Mydland, Margareth Øverland · 2013 · PLoS ONE
86. Peroxiredoxin-3 is overexpressed in prostate cancer and promotes cancer cell survival by protecting cells from oxidative stress
    Hayley C. Whitaker, Divya Patel, William Howat, Anne Yvonne Warren, Jonathan D. Kay, Trogon Sangan, John C. Marioni, J Mitchell, Sarah Aldridge, Hayley J. Luxton et al. · 2013 · British Journal of Cancer
87. CIC-DUX4 Induces Small Round Cell Sarcomas Distinct from Ewing Sarcoma
    Toyoki Yoshimoto, Miwa Tanaka, Mizuki Homme, Yukari Yamazaki, Yutaka Takazawa, Cristina R. Antonescu, Takuro Nakamura · 2017 · Cancer Research
88. Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth
    Adi Laurentiu Tarca, Bálint Pataki, Roberto J. Romero, Marina Sirota, Yuanfang Guan, Rintu Kutum, Nardhy Gomez‐Lopez, Bogdan Done, Gaurav Bhatti, Thomas Von Yu et al. · 2021 · Cell Reports Medicine
89. A high-risk retinoblastoma subtype with stemness features, dedifferentiated cone states and neuronal/ganglion cell gene expression
    Jing Liu, Daniela Ottaviani, Meriem Sefta, Céline Desbrousses, Elodie Chapeaublanc, Rosario Aschero, Nanor Sirab, Fabiana J. Lubieniecki, Gabriela Lamas, Laurie Tonon et al. · 2021 · Nature Communications
90. NOTCH-YAP1/TEAD-DNMT1 Axis Drives Hepatocyte Reprogramming Into Intrahepatic Cholangiocarcinoma
    Shikai Hu, Laura Maria Molina, Junyan Tao, Silvia Liu, Mohammed Hassan, Sucha Singh, Minakshi Poddar, Aaron W. Bell, Daniela Sia, Michael Oertel et al. · 2020 · Gastroenterology
91. DiffVar: a new method for detecting differential variability with application to methylation in cancer and aging
    B. Phipson, A. Oshlack · 2014 · Genome Biology
92. DNA methylation and gene expression profiles show novel regulatory pathways in hepatocellular carcinoma
    Silvia Udali, Patrizia Guarini, Andrea Ruzzenente, Alberto Ferrarini, Alfredo Guglielmi, Valentina Lotto, Paola Tononi, Patrizia Pattini, Sara Moruzzi, Tommaso Campagnaro et al. · 2015 · Clinical Epigenetics
93. Prediction of Graft-Versus-Host Disease in Humans by Donor Gene-Expression Profiling
    Chantal Baron, Roland Somogyi, Larry D. Greller, Vincent Rineau, Peter A. Wilkinson, Carolyn R. Cho, Mark J. Cameron, David J. Kelvin, Pierre Chagnon, Denis‐Claude Roy et al. · 2007 · PLoS Medicine
94. Modified linear discriminant analysis approaches for classification of high-dimensional microarray data
    Ping Xu, Guy Nathaniel Brock, Rudolph S. Parrish · 2008 · Computational Statistics & Data Analysis
95. Novel expression signatures identified by transcriptional analysis of separated leucocyte subsets in systemic lupus erythematosus and vasculitis
    Paul Lyons, Eoin F. McKinney, Tim F. Rayner, Alexander Hatton, Hayley B Woffendin, Maria Koukoulaki, Thomas C Freeman, David R.W. Jayne, Afzal Chaudhry, Kenneth G. C. Smith · 2009 · Annals of the Rheumatic Diseases
96. The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes
    Ingrid A. Dahlman, Indranil Sinha, Hui Gao, David Brodin, Anders Thorell, Mikael Rydén, Daniel Peter Andersson, Johan Henriksson, Alexander Perfilyev, Charlotte Ling et al. · 2015 · International Journal of Obesity
97. Mining the bladder cancer-associated genes by an integrated strategy for the construction and analysis of differential co-expression networks
    Su-Ping Deng, Lin Zhu, De-Shuang Huang · 2015 · BMC Genomics
98. Conservation of immune gene signatures in solid tumors and prognostic implications
    Julia Chifman, Ashok Pullikuth, Jeff W. Chou, Davide Bedognetti, Lance David Miller · 2016 · BMC Cancer
99. Multiple mechanisms of MYCN dysregulation in Wilms tumour
    Richard Dafydd Williams, Tasnim Chagtai, Marisa Alcaide-German, John Richard Apps, Jenny Wegert, Sergey Popov, Gordan M. Vujanic, Harm van Tinteren, Marry M. van den Heuvel‐Eibrink, Marcel Kool et al. · 2015 · Oncotarget
100. A Specialized Outer Layer of the Primary Cell Wall Joins Elongating Cotton Fibers into Tissue-Like Bundles
     Bir Singh, Utku Avcı, Sarah E. Eichler Inwood, Mark J. Grimson, Jeff Landgraf, Debra Mohnen, Iben Sørensen, Curtis Gene Wilkerson, William G. T. Willats, Candace H. Haigler · 2009 · PLANT PHYSIOLOGY