The DOI matches its Crossref record.
Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interactions
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Controlled natural language can serve in the fully formalized case as a user-friendly syntax for representing scientific facts.
“we had shown before that controlled natural language can also serve in the fully formalized case as a user-friendly syntax for representing scientific facts (Kuhn et al., 2006).”
From Decentralized provenance-aware publishing with nanopublications (2016) · cites this paper as Kuhn et al., 2006
Citations
Cites
No references could be resolved yet.
Research works printed but not linked: 17
- Bernstein, A., Kaufmann, E., Kaiser, C.: Querying the Semantic Web with Ginseng: A Guided Input Natural Language Search Engine. In: Department of Informatics, University of Zurich (2005) · DOI
- Booch, G., Rumbaugh, J., Jacobson, I.: The Unified Modeling Language User Guide, 1st edn. Addison-Wesley, Reading (1998)
- Cohen, A.M., Hersh, W.R.: A survey of current work in biomedical text mining. Briefings in Bioinformatics 6(1), 57–71 (2004) · DOI
- Daraselia, N., Yuryev, A., Egorov, S., Novichkova, S., Nikitin, A., Mazo, I.: Extracting human protein interactions from MEDLINE using a full-sentence parser. Bioinformatics 20(5), 604–611 (2004) · DOI
- Doms, A., Schroeder, M.: GoPubMed: exploring PubMed with the Gene Ontology. In Nucleic Acids Research 33, W783–W786 (2005) · DOI
- Fuchs, N.E., Kaljurand, K., Schneider, G.: Attempto Controlled English Meets the Challenges of Knowledge Representation, Reasoning, Interoperability and User Interfaces. In: The 19th International FLAIRS Conference (FLAIRS 2006) (2006)
- Fuchs, N.E., Schwertel, U., Schwitter, R.: Attempto Controlled English – Not Just Another Logic Specification Language. In: Flener, P. (ed.) LOPSTR 1998. LNCS, vol. 1559, p. 1. Springer, Heidelberg (1999), http://www.ifi.unizh.ch/attempto/publications/papers/LOPSTR98.pdf · DOI
- Fitting, M.: First-Order Logic and Automated Theorem Proving, 2nd edn. Springer, New York (1996) · DOI
- Giot, L., Bader, J.S., Brouwer, C., Chaudhuri, A., et al.: A Protein Interaction Map of Drosophila melanogaster. Science 302(5651), 1727–1736 (2003) · DOI · Paper page
- Gruber, T.R.: Toward Principles for the Design of Ontologies Used for Knowledge Sharing. International Journal of Human-Computer Studies 43(5-6), 907–928 (1995) · DOI · Paper page
- Hirschman, L., Park, J.C., Tsujii, J., Wong, L., Wu, C.H.: Accomplishments and challenges in literature data mining for biology. In Bioinformatics Review 18(12), 1553–1561 (2002) · DOI
- Nardi, D., Brachman, R.J.: An Introduction to Description Logics. In: The Description Logic Handbook: Theory, Implementation, and Applications. Cambridge University Press, Cambridge (2003)
- Schwikowski, B., Uetz, P., Fields, S.: A network of protein-protein interactions in yeast. In Nature Biotechnology 18, 1257–1261 (2000) · DOI
- Schwitter, R., Ljungberg, A., Hood, D.: ECOLE: A Look-ahead Editor for a Controlled Language. In: Proceedings of EAMT-CLAW 2003, Controlled Language Translation, pp. 141–150. Dublin City University (2003)
- Thompson, C.W., Pazandak, P., Tennant, H.R.: Talk to Your Semantic Web. In IEEE Internet Computing 9(6), 75–79 (2005) · DOI
- Uschold, M., Gruninger, M.: Ontologies: Principles, Methods and Applications. Knowledge Engineering Review 11(2) (1996) · DOI
- Yeh, A., Morgan, A., Colosimo, M., Hirschman, L.: BioCreAtIvE Task 1A: gene mention finding evaluation. BMC Bioinformatics 6 (2005) · DOI
Cited by
Sorted by citations
Decentralized provenance-aware publishing with nanopublications
Kuhn, T., Chichester, C., Krauthammer, M., Queralt-Rosinach, N., Verborgh, R., Giannakopoulos, G., Ngonga Ngomo, A.-C., Viglianti, R., & Dumontier, M. (2016) · PeerJ Computer Science · doi:10.7717/peerj-cs.78 · Cited by 90
Self-citation
Metadata
- Authors
- Kuhn, T., Royer, L., Fuchs, N. E., & Schröder, M.
- Venue
- Lecture Notes in Computer Science
- Publisher
- Springer Berlin Heidelberg
- Published
- 2006
- Pages
- 66-81
- ISSN
- 0302-9743
- 1611-3349
- Cited by
- 10
- References
- 0
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review