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A Protein Interaction Map of Drosophila melanogaster
Abstract
Drosophila melanogaster is a proven model system for many aspects of human biology. Here we present a two-hybrid–based protein-interaction map of the fly proteome. A total of 10,623 predicted transcripts were isolated and screened against standard and normalized complementary DNA libraries to produce a draft map of 7048 proteins and 20,405 interactions. A computational method of rating two-hybrid interaction confidence was developed to refine this draft map to a higher confidence map of 4679 proteins and 4780 interactions. Statistical modeling of the network showed two levels of organization: a short-range organization, presumably corresponding to multiprotein complexes, and a more global organization, presumably corresponding to intercomplex connections. The network recapitulated known pathways, extended pathways, and uncovered previously unknown pathway components. This map serves as a starting point for a systems biology modeling of multicellular organisms, including humans.
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Interaction experiments by unbiased screens in mammalian cells and protein-protein interaction studies in Drosophila produced interactome data that in aggregate includes all the proteins identified experimentally in our mass spectrometry data, including FAM45A as a CCC and retriever binding protein.
“interaction experiments by unbiased screens in mammalian cells46, as well as protein–protein interaction studies in Drosophila47–49, produced interactome data that in aggregate includes all the proteins identified experimentally in our mass spectrometry data, including the identification of FAM45A as a CCC and retriever binding protein”
From Endosomal PI(3)P regulation by the COMMD/CCDC22/CCDC93 (CCC) complex controls membrane protein recycling (2019) · cites this paper as [47]
NCBI Gene collates data from three prior interactome studies.
“Interacting partners in Drosophila melanogaster were identified in NCBI Gene, which collates data from three prior interactome studies47–49.”
From Endosomal PI(3)P regulation by the COMMD/CCDC22/CCDC93 (CCC) complex controls membrane protein recycling (2019) · cites this paper as [47]
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Metadata
- Authors
- Giot, L., Bader, J. S., Brouwer, C., Chaudhuri, A., Kuang, B., Li, Y., Hao, Y. L., Ooi, C. E., Godwin, B., Vitols, E., Vijayadamodar, G., Pochart, P., Machineni, H., Welsh, M., Kong, Y., Zerhusen, B., Malcolm, R., Varrone, Z., Collis, A., Minto, M., Burgess, S., McDaniel, L., Stimpson, E., Spriggs, F., Williams, J., Neurath, K., Ioime, N., Agee, M., Voss, E., Furtak, K., Renzulli, R., Aanensen, N., Carrolla, S., Bickelhaupt, E., Lazovatsky, Y., DaSilva, A., Zhong, J., Stanyon, C. A., Finley, R. L., White, K. P., Braverman, M., Jarvie, T., Gold, S., Leach, M., Knight, J., Shimkets, R. A., McKenna, M. P., Chant, J., & Rothberg, J. M.
- Venue
- Science
- Published
- 2003-12-05
- Volume
- 302
- Issue
- 5651
- Pages
- 1727-1736
- ISSN
- 0036-8075
- 1095-9203
- Cited by
- 1,863
- References
- 4
- Language
- en
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