Cited by 15

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Synaptic Partner Prediction from Point Annotations in Insect Brains

Buhmann, Julia, Krause, Renate, Lentini, Rodrigo Ceballos, Eckstein, Nils, Cook, Matthew, Turaga, Srinivas, Funke, Jan·2018·Lecture Notes in Computer Science

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Research works printed but not linked: 12

  1. Becker, C., Ali, K., Knott, G., Fua, P.: Learning context cues for synapse segmentation. IEEE Trans. Med. Imaging 32(10), 1864–1877 (2013) · DOI
  2. Funke, J., et al.: Large scale image segmentation with structured loss based deep learning for connectome reconstruction. IEEE Trans. Pattern Anal. Mach. Intell. (early access). https://doi.org/10.1109/TPAMI.2018.2835450 · DOI
  3. Huang, G.B., Scheffer, L.K., Plaza, S.M.: Fully-automatic synapse prediction and validation on a large data set. arXiv preprint arXiv:1604.03075 (2016) · arXiv
  4. Jagadeesh, V., Anderson, J., Jones, B., Marc, R., Fisher, S., Manjunath, B.: Synapse classification and localization in electron micrographs. Pattern Recognit. Lett. 43, 17–24 (2014) · DOI
  5. Januszewski, M., Maitin-Shepard, J., Li, P., Kornfeld, J., Denk, W., Jain, V.: Flood-filling networks. arXiv preprint arXiv:1611.00421 (2016) · arXiv
  6. Kasthuri, N., et al.: Saturated reconstruction of a volume of neocortex. Cell 162(3), 648–661 (2015) · DOI · Paper page
  7. Kingma, D.P., Ba, J.: Adam: A method for stochastic optimization. CoRR abs/1412.6980 (2014). http://arxiv.org/abs/1412.6980 · arXiv
  8. Kreshuk, A., Funke, J., Cardona, A., Hamprecht, F.A.: Who is talking to whom: synaptic partner detection in anisotropic volumes of insect brain. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9349, pp. 661–668. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24553-9_81 · DOI · Paper page
  9. Kreshuk, A., Koethe, U., Pax, E., Bock, D.D., Hamprecht, F.A.: Automated detection of synapses in serial section transmission electron microscopy image stacks. PloS One 9(2), e87351 (2014) · DOI
  10. Kreshuk, A.: Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images. PloS One 6(10), e24899 (2011) · DOI
  11. Roncal, W.G., et al.: Vesicle: volumetric evaluation of synaptic interfaces using computer vision at large scale. arXiv preprint arXiv:1403.3724 (2014) · DOI
  12. Staffler, B., Berning, M., Boergens, K.M., Gour, A., van der Smagt, P., Helmstaedter, M.: Synem, automated synapse detection for connectomics. eLife 6, e26414 (2017) · DOI · Paper page

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Metadata

Authors
Buhmann, J., Krause, R., Lentini, R. C., Eckstein, N., Cook, M., Turaga, S., & Funke, J.
Venue
Lecture Notes in Computer Science
Published
2018
Pages
309-316
ISSN
  • 0302-9743
  • 1611-3349
Cited by
15
References
2
Language
en

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