Genome-wide meta-analysis for Alzheimer’s disease cerebrospinal fluid biomarkers
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Abstract
Amyloid-beta 42 (Aβ42) and phosphorylated tau (pTau) levels in cerebrospinal fluid (CSF) reflect core features of the pathogenesis of Alzheimer’s disease (AD) more directly than clinical diagnosis. Initiated by the European Alzheimer & Dementia Biobank (EADB), the largest collaborative effort on genetics underlying CSF biomarkers was established, including 31 cohorts with a total of 13,116 individuals (discovery n = 8074; replication n = 5042 individuals). Besides the APOE locus, novel associations with two other well-established AD risk loci were observed; CR1 was shown a locus for Aβ42 and BIN1 for pTau. GMNC and C16orf95 were further identified as loci for pTau, of which the latter is novel. Clustering methods exploring the influence of all known AD risk loci on the CSF protein levels, revealed 4 biological categories suggesting multiple Aβ42 and pTau related biological pathways involved in the etiology of AD. In functional follow-up analyses, GMNC and C16orf95 both associated with lateral ventricular volume, implying an overlap in genetic etiology for tau levels and brain ventricular volume.
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The C16orf95 locus has been associated with phosphorylated tau levels in cerebrospinal fluid and with ventricular volume.
“the C16orf95 locus has been associated with phosphorylated tau levels in cerebrospinal fluid as well as with ventricular volume (Supplementary Note)11,12.”
From Consensus meta-analysis of genome-wide association studies for Alzheimer’s disease and related dementias (2026) · cites this paper as [11]
Genetic variants in the GMNC-OSTN region on chromosome 3 were associated both with smaller ventricles and with increased CSF levels of the AD biomarker P-tau.
“Recently, it was reported that genetic variants in the GMNC‐OSTN region on chromosome 3 (described in detail in this study) were associated both with smaller ventricles and with increased CSF levels of the AD biomarker P‐tau (Jansen et al, 2022).”
From The genetic regulation of protein expression in cerebrospinal fluid (2023) · cites this paper as Jansen et al, 2022
An association was observed between rs9877502 and CSF levels of phosphorylated tau (P=1×10−36).
“Importantly, we also observed an association between rs9877502 and CSF levels of phosphorylated tau (P=1×10−36), a key biomarker for AD35.”
From Proteogenomic analysis of human cerebrospinal fluid identifies neurologically relevant regulation and implicates causal proteins for Alzheimer’s disease (2024) · cites this paper as [35]
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References 82 · Cited by 132
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- Authors
- Jansen, I. E., van der Lee, S. J., Gomez-Fonseca, D., de Rojas, I., Dalmasso, M. C., Grenier-Boley, B., Zettergren, A., Mishra, A., Ali, M., Andrade, V., Bellenguez, C., Kleineidam, L., Küçükali, F., Sung, Y. J., Tesí, N., Vromen, E. M., Wightman, D. P., Alcolea, D., Alegret, M., Alvarez, I., Amouyel, P., Athanasiu, L., Bahrami, S., Bailly, H., Belbin, O., Bergh, S., Bertram, L., Biessels, G. J., Blennow, K., Blesa, R., Boada, M., Boland, A., Buerger, K., Carracedo, Á., Cervera-Carles, L., Chene, G., Claassen, J. A. H. R., Debette, S., Deleuze, J.-F., de Deyn, P. P., Diehl-Schmid, J., Djurovic, S., Dols-Icardo, O., Dufouil, C., Duron, E., Düzel, E., EADB consortium, Fladby, T., Fortea, J., Frölich, L., García-González, P., Garcia-Martinez, M., Giegling, I., Goldhardt, O., Gobom, J., Grimmer, T., Haapasalo, A., Hampel, H., Hanon, O., Hausner, L., Heilmann-Heimbach, S., Helisalmi, S., Heneka, M. T., Hernández, I., Herukka, S.-K., Holstege, H., Jarholm, J., Kern, S., Knapskog, A.-B., Koivisto, A. M., Kornhuber, J., Kuulasmaa, T., Lage, C., Laske, C., Leinonen, V., Lewczuk, P., Lleó, A., de Munain, A. L., Lopez-Garcia, S., Maier, W., Marquié, M., Mol, M. O., Montrreal, L., Moreno, F., Moreno-Grau, S., Nicolas, G., Nöthen, M. M., Orellana, A., Pålhaugen, L., Papma, J. M., Pasquier, F., Perneczky, R., Peters, O., Pijnenburg, Y. A. L., Popp, J., Posthuma, D., Pozueta, A., Priller, J., Puerta, R., Quintela, I., Ramakers, I., Rodriguez-Rodriguez, E., Rujescu, D., Saltvedt, I., Sanchez-Juan, P., Scheltens, P., Scherbaum, N., Schmid, M., Schneider, A., Selbæk, G., Selnes, P., Shadrin, A., Skoog, I., Soininen, H., Tárraga, L., Teipel, S., The GR@ACE study group, Tijms, B., Tsolaki, M., Van Broeckhoven, C., Van Dongen, J., van Swieten, J. C., Vandenberghe, R., Vidal, J.-S., Visser, P. J., Vogelgsang, J., Waern, M., Wagner, M., Wiltfang, J., Wittens, M. M. J., Zetterberg, H., Zulaica, M., van Duijn, C. M., Bjerke, M., Engelborghs, S., Jessen, F., Teunissen, C. E., Pastor, P., Hiltunen, M., Ingelsson, M., Andreassen, O. A., Clarimón, J., Sleegers, K., Ruiz, A., Ramirez, A., Cruchaga, C., Lambert, J.-C., & van der Flier, W.
- Affiliations
- Amsterdam Neuroscience (NL)
- Consejo Nacional de Investigaciones Científicas y Técnicas (AR)
- University of Gothenburg (SE)
- Université de Bordeaux (FR)
- Washington University in St. Louis (US)
- Inserm (FR)
- University of Bonn (DE)
- University of Antwerp (BE)
- Universitat Autònoma de Barcelona (ES)
- Instituto de Salud Carlos III (ES)
- University of Oslo (NO)
- Université Paris Cité (FR)
- Innlandet Hospital Trust (NO)
- University of Lübeck (DE)
- University Medical Center Utrecht (NL)
- Sahlgrenska University Hospital (SE)
- Commissariat à l'Énergie Atomique et aux Énergies Alternatives (FR)
- Universidade de Santiago de Compostela (ES)
- Radboud University Medical Center (NL)
- Oslo University Hospital (NO)
- German Center for Neurodegenerative Diseases (DE)
- Central Institute of Mental Health (DE)
- Medical University of Vienna (AT)
- TUM Klinikum (DE)
- University of Eastern Finland (FI)
- Sorbonne Université (FR)
- Akershus University Hospital (NO)
- Friedrich-Alexander-Universität Erlangen-Nürnberg (DE)
- Universidad de Cantabria (ES)
- Medical University of Białystok (PL)
- Erasmus MC (NL)
- Universitat Internacional de Catalunya (ES)
- University of Zurich (CH)
- Maastricht University (NL)
- Norwegian University of Science and Technology (NO)
- University of Duisburg-Essen (DE)
- University Hospital Bonn (DE)
- Aristotle University of Thessaloniki (GR)
- Karolinska Institutet (SE)
- Harvard University (US)
- Vrije Universiteit Brussel (BE)
- University of Cologne (DE)
- Uppsala University (SE)
- Corresponding author
- Jansen, Iris E.
- ORCID
- Jansen, Iris E.
- van der Lee, Sven J.
- de Rojas, Itziar
- Zettergren, Anna
- Mishra, Aniket
- Ali, Muhammad
- Bellenguez, Céline
- Kleineidam, Luca
- Küçükali, Fahri
- Sung, Yun Ju
- Vromen, Ellen M.
- Wightman, Douglas P.
- Alcolea, Daniel
- Alegret, Montserrat
- Amouyel, Philippe
- Athanasiu, Lavinia
- Bahrami, Shahram
- Belbin, Olivia
- Bergh, Sverre
- Bertram, Lars
- Biessels, Geert Jan
- Blennow, Kaj
- Blesa, Rafael
- Boland, Anne
- Carracedo, Ángel
- Cervera-Carles, Laura
- Claassen, Jurgen A. H. R.
- de Deyn, Peter Paul
- Djurovic, Srdjan
- Dufouil, Carole
- Duron, Emmanuelle
- Düzel, Emrah
- Fladby, Tormod
- Fortea, Juan
- García-González, Pablo
- Giegling, Ina
- Goldhardt, Oliver
- Gobom, Johan
- Grimmer, Timo
- Haapasalo, Annakaisa
- Hampel, Harald
- Hanon, Olivier
- Hausner, Lucrezia
- Helisalmi, Seppo
- Heneka, Michael T.
- Herukka, Sanna-Kaisa
- Holstege, Henne
- Kern, Silke
- Knapskog, Anne-Brita
- Koivisto, Anne M.
- Kornhuber, Johannes
- Kuulasmaa, Teemu
- Lage, Carmen
- Laske, Christoph
- Leinonen, Ville
- Lewczuk, Piotr
- Lleó, Alberto
- Maier, Wolfgang
- Marquié, Marta
- Mol, Merel O.
- Montrreal, Laura
- Nöthen, Markus M.
- Orellana, Adelina
- Pålhaugen, Lene
- Papma, Janne M.
- Pasquier, Florence
- Perneczky, Robert
- Peters, Oliver
- Pijnenburg, Yolande A. L.
- Popp, Julius
- Priller, Josef
- Puerta, Raquel
- Quintela, Inés
- Ramakers, Inez
- Rodriguez-Rodriguez, Eloy
- Rujescu, Dan
- Saltvedt, Ingvild
- Sanchez-Juan, Pascual
- Scheltens, Philip
- Scherbaum, Norbert
- Schmid, Matthias
- Schneider, Anja
- Selbæk, Geir
- Selnes, Per
- Shadrin, Alexey
- Skoog, Ingmar
- Soininen, Hilkka
- Tárraga, Lluís
- Teipel, Stefan
- Tijms, Betty
- Tsolaki, Magda
- Van Dongen, Jasper
- Vandenberghe, Rik
- Vidal, Jean-Sébastien
- Visser, Pieter J.
- Vogelgsang, Jonathan
- Waern, Margda
- Wagner, Michael
- Wiltfang, Jens
- Wittens, Mandy M. J.
- Zetterberg, Henrik
- Zulaica, Miren
- van Duijn, Cornelia M.
- Bjerke, Maria
- Engelborghs, Sebastiaan
- Jessen, Frank
- Teunissen, Charlotte E.
- Hiltunen, Mikko
- Ingelsson, Martin
- Andreassen, Ole A.
- Clarimón, Jordi
- Sleegers, Kristel
- Ramirez, Alfredo
- Cruchaga, Carlos
- Lambert, Jean-Charles
- van der Flier, Wiesje
- Venue
- Acta Neuropathologica
- Published
- 2022-09-06
- Volume
- 144
- Issue
- 5
- Pages
- 821-842
- ISSN
- 0001-6322 (ISSN-L)
- 1432-0533
- PMC
- PMC9547780
- OpenAlex
- W4294762973
- Cited by
- 132
- References
- 82
- Citations by year
- 2026: 30 · 2025: 38 · 2024: 37 · 2023: 23 · 2022: 4
- FWCI
- 16.55
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
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- Dipòsit Digital de Documents de la UAB (Universitat Autònoma de Barcelona) (submittedVersion, cc-by)
- IRIS (submittedVersion, cc-by)
- Lirias (KU Leuven) (submittedVersion, cc-by)
- Open Repository and Bibliography (University of Luxembourg) (submittedVersion, cc-by)
- Edinburgh Research Explorer (University of Edinburgh) (submittedVersion, cc-by)
- University of Groningen research database (University of Groningen / Centre for Information Technology) (submittedVersion, cc-by)
- UCrea (University of Cantabria) (submittedVersion, cc-by)
- Digital Commons@Becker (Washington University School of Medicine) (submittedVersion, cc-by)
- EUR Research Repository (Erasmus University Rotterdam) (submittedVersion, cc-by)
- Uppsala University Publications (Uppsala University) (submittedVersion, other-oa)
- HAL (submittedVersion, cc-by)
- HAL (submittedVersion)
- Communities in ADDI (University of the Basque Country) (submittedVersion, cc-by)
- NORA - Norwegian Open Research Archives (submittedVersion, cc-by)
- Research Publications (Maastricht University) (submittedVersion, cc-by)
- Utrecht University Repository (Utrecht University) (submittedVersion, other-oa)
- UCL Discovery (University College London) (submittedVersion)
- Open access LMU (Ludwid Maxmilian's Universitat Munchen) (submittedVersion, cc-by)
- Työväentutkimus Vuosikirja (submittedVersion)
- Hispana (submittedVersion, cc-by)
- LillOA (Université de Lille (University Of Lille)) (submittedVersion, other-oa)
- mediaTUM (Technical University of Munich) (submittedVersion)
- mediaTUM – the media and publications repository of the Technical University Munich (Technical University Munich) (submittedVersion, other-oa)
- Oskar-Bordeaux (Universite de Bordeaux) (submittedVersion, cc-by)
- DZNE Pub (submittedVersion, other-oa)
- GoeScholar The Publication Server of the Georg-August-Universität Göttingen (Georg-August-Universität Göttingen) (submittedVersion, cc-by)
- Pure Amsterdam UMC (submittedVersion, cc-by)
- VUBIR (Vrije Universiteit Brussel) (submittedVersion)
- Zurich Open Repository and Archive (University of Zurich) (submittedVersion, cc-by)
- Research Publications (Maastricht University) (submittedVersion, other-oa)
- Data Archiving and Networked Services (DANS) (submittedVersion, other-oa)
- Zurich Open Repository and Archive (University of Zurich)
- Funders
- EU Joint Programme – Neurodegenerative Disease Research (European Alzheimer DNA BioBank, EADB)
- Topics
- Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
- Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Keywords
- Alzheimer's disease, cerebrospinal fluid biomarkers, amyloid-beta 42, phosphorylated tau, genetic susceptibility loci, complement receptor 1, BIN1, apolipoprotein E, lateral ventricular volume
- MeSH terms
- Alzheimer Disease, Apolipoproteins E, Humans, Peptide Fragments, Biomarkers, Amyloid beta-Peptides, tau Proteins, Cell Cycle Proteins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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